Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0496
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0331 - 16738148-16738231,16738232-16738318,16738486-167385... 32 0.11
02_05_1191 + 34856635-34856775,34856878-34856942,34857096-348571... 30 0.59
03_02_0173 + 6138406-6138628,6139769-6139857,6139922-6140608,614... 29 0.78
10_08_0809 - 20725858-20725950,20726375-20726545,20726895-207271... 27 3.1
01_06_1675 + 39078774-39078890,39079607-39079723,39079950-390800... 27 3.1
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 27 4.1
10_08_0659 + 19647037-19647464,19647569-19647659,19648998-196490... 27 4.1
06_03_1047 - 27133869-27134345,27134444-27134701,27134841-271350... 27 4.1
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 27 4.1
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 27 5.5
06_01_1157 - 9843140-9843182,9843214-9843303,9845080-9845408 26 9.6
06_01_0213 + 1628974-1629339,1629441-1629590,1630935-1631095,163... 26 9.6
04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036 26 9.6
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022... 26 9.6
01_04_0007 - 15038268-15039062,15039177-15039711,15039887-150399... 26 9.6
>09_04_0331 -
16738148-16738231,16738232-16738318,16738486-16738582,
16739139-16739176,16740140-16740196,16740487-16740964,
16741199-16741203
Length = 281
Score = 32.3 bits (70), Expect = 0.11
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 1/106 (0%)
Frame = +2
Query: 17 C*AGSSTMKVLIVLSCVLVAVLADDKYTDKYDKINLQEILENKRLLESYMDCVLGKGKCT 196
C S ++V++ L + L D+K Y + E L+ + LLE + C LG G+ T
Sbjct: 144 CKTEHSKLQVVLSLLHLKARYLEDEKPLKSY-AYPMLENLDKEGLLEQLLHCGLGAGEVT 202
Query: 197 PEGKELKDHLQEALQTGCEKCTEAQ*KGAETSIDYL-INNELEIWK 331
+ + Q+ +KC E G S L + + L +W+
Sbjct: 203 ARVEGVGGAGQQCPSCAVDKCKELSMLGIRRSRGGLNLMDFLAVWE 248
>02_05_1191 +
34856635-34856775,34856878-34856942,34857096-34857165,
34857499-34857570,34857668-34857871,34858793-34858866,
34858965-34859048,34859582-34859669,34859763-34859844,
34860178-34860251,34860474-34860581,34860683-34860747,
34861317-34861430,34861644-34861743,34861840-34861893,
34861972-34862067
Length = 496
Score = 29.9 bits (64), Expect = 0.59
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 125 QEILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALQTGCEKCT 262
QE K +++S D VLG C P+ E+ + AL+ G K T
Sbjct: 416 QEKTVMKLVVDSETDKVLGASMCGPDAPEIIQGMAVALKCGATKAT 461
>03_02_0173 +
6138406-6138628,6139769-6139857,6139922-6140608,
6140682-6140834,6140922-6141290
Length = 506
Score = 29.5 bits (63), Expect = 0.78
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 92 KYTDKYDKINLQEILENKRLLESYMDCVLGKGK 190
+++ YD +L L+ LLE+++ C+L KGK
Sbjct: 358 RFSRAYDYFSLVSFLDASPLLETFILCILQKGK 390
>10_08_0809 -
20725858-20725950,20726375-20726545,20726895-20727101,
20727208-20727879
Length = 380
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 239 VELLEDDLSVPSLREYTCPCRARNPYTTP 153
+EL++DD S L E P R P TTP
Sbjct: 1 MELMDDDGSSSLLEELMAPLRRGTPTTTP 29
>01_06_1675 +
39078774-39078890,39079607-39079723,39079950-39080006,
39080340-39080417,39080553-39080597,39080872-39080931,
39081149-39081271,39081850-39081927,39082056-39082125,
39082612-39082719,39082962-39083095,39083177-39083247,
39083384-39083432,39083507-39083557
Length = 385
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 127 LQVNFVIFVSVLIISKYGHEYTAQNYKD 44
L +NFV+ +S++IIS H+Y + KD
Sbjct: 312 LTINFVLAISIVIISM--HQYLSNQIKD 337
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 194 TPEGKELKDHLQEALQTGCEKCTEAQ*KGAETSIDYLINNELEIWKELTAH 346
+P+ + LKD L L C++C + ET+ D NE ++++ L+ H
Sbjct: 254 SPQKEALKDDLTTTLVQQCQQCQRTIQRIIETAGD----NEAQLFEALSVH 300
>10_08_0659 +
19647037-19647464,19647569-19647659,19648998-19649039,
19649179-19649237,19649559-19649634,19649735-19649866,
19650251-19650358,19651040-19651094,19651187-19651437
Length = 413
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 165 WIACSARASVLPKGRN*KIIFKKLYRLVARNALKPNKRALK 287
W AC A A+VL + ++ +L NA++P A+K
Sbjct: 143 WWACIALATVLIRSATVPLLVNQLKATQKLNAIRPEMEAIK 183
>06_03_1047 -
27133869-27134345,27134444-27134701,27134841-27135041,
27135242-27135584,27135674-27135732,27136256-27136581,
27136753-27136849,27137072-27137182,27137691-27138305,
27139578-27139880
Length = 929
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 134 LENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALQTGCEKCTEA 268
+E+ RLL+SY + + G G+E + H++ T C CT A
Sbjct: 25 MEDVRLLDSYDEEMGGGAAAAAAGEEEEAHVRVTGMT-CSACTSA 68
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 68 LVAVLADDKYTDKYDKINLQEILENKRLLESYM 166
L + D+ D DK LQEI+ N +L E Y+
Sbjct: 304 LAMEIDDEIAADGNDKEGLQEIVNNSKLSEGYL 336
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 176 LGKGKCTPEGKELKD-HLQEALQT 244
+G+ C PE KELKD L EA QT
Sbjct: 177 MGERLCVPENKELKDLILTEAHQT 200
>06_01_1157 - 9843140-9843182,9843214-9843303,9845080-9845408
Length = 153
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 56 LSCVLVAVLADDKYTDKYDKINLQEILENKRLLESYM 166
+SC+++ ++ +Y D K L+E+LE +RL E ++
Sbjct: 111 MSCIVLVMMIVSRYLDGARKQYLREMLE-ERLTEGHL 146
>06_01_0213 +
1628974-1629339,1629441-1629590,1630935-1631095,
1631178-1631892,1632045-1632091,1632295-1632316
Length = 486
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 65 VLVAVLADDKYTDKYDKINLQEILENKRLLESYMDCV 175
+LVA+L+D K+ Y K+N + + + L +D V
Sbjct: 387 LLVAMLSDQKFISDYLKVNRERLRKMYHLFVDALDQV 423
>04_04_0987 + 29938486-29938505,29938667-29938859,29938961-29941036
Length = 762
Score = 25.8 bits (54), Expect = 9.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +2
Query: 125 QEILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALQTGCEKCTEAQ 271
+EI+ + ++ ++ V GK E +E HL+ L + C EA+
Sbjct: 560 EEIINARAQMDKTLEAVKGKESENAELQEKLKHLEAQLMEANKTCEEAK 608
>01_06_1149 -
34901338-34901466,34901707-34901838,34901940-34902290,
34902301-34902619,34902756-34902784,34903641-34903715,
34903799-34903900,34904002-34904120,34904752-34904875,
34904976-34905026,34905143-34905241,34905751-34905861
Length = 546
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 80 LADDKYTDKYDKINLQEILENKRLLESY 163
L K T Y INL +++ NKR+ E+Y
Sbjct: 500 LIHGKETLGYIDINLADVISNKRINETY 527
>01_04_0007 -
15038268-15039062,15039177-15039711,15039887-15039936,
15040376-15040446,15040683-15040731
Length = 499
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 176 LGKGKCTPEGKELKD-HLQEALQT 244
LG+ C P+ KELKD L EA QT
Sbjct: 91 LGERLCVPDDKELKDVILTEAHQT 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,884,302
Number of Sequences: 37544
Number of extensions: 160240
Number of successful extensions: 454
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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