Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0496
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)                    29   1.4  
SB_12797| Best HMM Match : HECT (HMM E-Value=0)                        29   1.4  
SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)                      28   1.9  
SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.9  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   2.4  
SB_41682| Best HMM Match : PX (HMM E-Value=3.9)                        27   3.2  
SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)               27   5.7  
SB_21273| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)                   26   7.5  
SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)                      26   7.5  
SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)                26   9.9  
SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)                     26   9.9  
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.9  

>SB_7412| Best HMM Match : IRK (HMM E-Value=2.2e-20)
          Length = 610

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 128 EILENKRLLESYMDCVLGKGKCTPEGKEL 214
           +I    +L+ES+M  V+ +  CT EGKE+
Sbjct: 390 DIRTKSQLIESHMRAVVVRRHCTKEGKEI 418


>SB_12797| Best HMM Match : HECT (HMM E-Value=0)
          Length = 749

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 170 CVLGKGKCTPEGKELKDHLQEALQTGCEKCTE 265
           CVL + K  PE   L +H +E+L +  + C +
Sbjct: 118 CVLNQPKSKPENSHLNNHAEESLLSTLKTCRD 149


>SB_34783| Best HMM Match : Gam (HMM E-Value=0.24)
          Length = 347

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +2

Query: 119 NLQEILEN-KRLLESYMDC---VLGKGKCTPEGKELKDHLQEALQTGCEKCTEAQ 271
           N Q+ LE+ +++LE ++     V+   +   E + L+D  +EA  TGC KC+ A+
Sbjct: 122 NSQKRLESHEKVLEEHLKEMLEVIAHMQMREEKRYLRDMSREAATTGCVKCSSAR 176


>SB_21873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
 Frame = +2

Query: 122 LQEILENKRLLESYMDCVLGKG-KCTPEGKEL--KDHLQEALQTGCE 253
           +QEI+ + +L+E   DC+L +  +  PEG +L  + ++ +A+   C+
Sbjct: 229 MQEIISSSQLMEYLGDCILAQAPERLPEGAQLNYEQNMHDAIGIMCK 275


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 92   KYTDKYDKINLQEIL---ENKRLLESYMDCVLGKGKCTPEGKELKDHLQEA 235
            K  D + KI+ Q I    ENK L +   D    K K   E KE+K  L+EA
Sbjct: 1377 KIEDDHKKIHQQNIERDHENKMLSKRVADLTALKEKFEHEKKEMKQSLREA 1427


>SB_41682| Best HMM Match : PX (HMM E-Value=3.9)
          Length = 96

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 199 GSTLALAEHAIHIRLQEPLVLQNFLQVNFV 110
           G  LA  E  +H+ LQEP++ +N++   F+
Sbjct: 45  GHPLAQNEKCLHMFLQEPMIDKNYVPGKFI 74


>SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)
          Length = 229

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +2

Query: 185 GKCTPEGKELKDHLQEALQTG-----CEKCTEAQ*KGAETSIDYLINN 313
           GKC  E   LKDH+   L TG     C +C +   K     I  LI++
Sbjct: 43  GKCFTEAARLKDHI---LHTGEKPYQCSQCGKCSAKSGNHKIHVLIHS 87


>SB_21273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 223 MIFQFLPFGSTLA--LAEHAIHIRLQEPLVLQNFLQVNFVIFVSVLIISKYGHEYTAQNY 50
           M +QF  FG+  +       +HIR     +LQ      + + +S  I +KY H   A +Y
Sbjct: 253 MAYQFKLFGNPWSGYSIVDGLHIRSMLCFILQMLASRGWKLLISADISAKYVHRDKAPDY 312

Query: 49  K-DLH 38
             D+H
Sbjct: 313 PLDVH 317


>SB_10487| Best HMM Match : FGF (HMM E-Value=1.4e-06)
          Length = 617

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 188 KCTPEGKELKDHLQEALQTGCEKCTEAQ 271
           K TP G+ LKD  Q   Q+   KCT  +
Sbjct: 329 KSTPSGRYLKDFRQSTDQSRRPKCTRVK 356


>SB_50891| Best HMM Match : CsbD (HMM E-Value=3.4)
          Length = 311

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +2

Query: 89  DKYTDKYDKINLQEILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALQTGCEKCTE 265
           ++   K +++N   I + KR  E       GKG  T +GK   +  +EA++ G E C +
Sbjct: 113 ERVNKKKERLNKGSIEQGKRATEQ------GKG-ATEQGKGATEQGKEAIEQGKEACEQ 164


>SB_58994| Best HMM Match : EGF_CA (HMM E-Value=2.3e-29)
          Length = 309

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 131 ILENKRLLESYMDCVLGKGKC 193
           + +NKR      +C+LGKG C
Sbjct: 204 LTDNKRTCVDMNECILGKGLC 224


>SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 44  VLIVLSCVLVAVLADDKYTDKYDKINLQEILENKRLLESY 163
           +L +  C L+ V  + K+T+K  K    E  ++K   E+Y
Sbjct: 400 LLFLFCCKLIVVSPNKKFTEKKGKCRTPEKKDDKLSKENY 439


>SB_17550| Best HMM Match : WW (HMM E-Value=0.0012)
          Length = 677

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 77  VLADDKYTDKYDKINLQEILENKRLLESYMDCVL 178
           V+  D ++D YD++  QE+L  +R     + C L
Sbjct: 507 VVRADYFSDYYDELKAQEVLAERRAKADDIVCEL 540


>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2342

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 125 QEILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEALQTGCEK 256
           Q + ENKR     +D  + K   TPE  +++  L+  +++ C+K
Sbjct: 229 QHLEENKRAARRDLDAFIDKQIGTPE--KVRSDLRGEIESACQK 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,538,314
Number of Sequences: 59808
Number of extensions: 200386
Number of successful extensions: 623
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)