Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0496
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    30   0.54 
AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical ...    28   2.2  
AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical ...    27   3.8  
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    27   5.0  
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AL034364-3|CAA22253.1|  162|Caenorhabditis elegans Hypothetical ...    26   6.6  
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z70718-2|CAA94676.1|  373|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U80029-1|AAB37581.1|  167|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical ...    26   8.7  
AF098995-8|AAC67477.1|  306|Caenorhabditis elegans F-box b prote...    26   8.7  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = -3

Query: 188 CPCRARNPYTTPGASCSPKFLAS*FCHICQCTYHQQV 78
           C CR +  Y      C P F     C  CQC  H  +
Sbjct: 864 CVCREKGIYGRQCNQCQPGFWGFPECRTCQCNDHANI 900


>AF099919-4|AAC68791.1|  230|Caenorhabditis elegans Hypothetical
           protein F40G9.12 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 113 CHICQCTYHQQVRPRVHSS 57
           C +CQ TY  Q  PR+H S
Sbjct: 91  CGVCQLTYSSQRIPRIHPS 109


>AF099919-6|AAC68803.1|  261|Caenorhabditis elegans Hypothetical
           protein F40G9.14 protein.
          Length = 261

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 113 CHICQCTYHQQVRPRVHSS 57
           C  CQ TY  Q  PR+H S
Sbjct: 210 CTSCQLTYSSQTFPRIHPS 228


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
            protein Y47D3A.26 protein.
          Length = 1205

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 71   VAVLADDKYTDKYDKINLQEILENKRLLESYM-DCVLGKGKCTPEGKELKDHLQEALQ 241
            ++ L D +  +K  +IN+  +LE +R LE    D  L   K T +  E+K   +++L+
Sbjct: 888  ISELQDYETKEKALQINIDNVLEQQRDLEKQQADFQLQYDKITAKEDEVKQKREDSLK 945


>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical
           protein C14C10.5 protein.
          Length = 1908

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 113 KINLQEILENKRLLESYMDCVLGKGKCTPEGKELKDHLQEAL 238
           K++ + +L+N  L+E+ MD V+   KCT   ++  + L   L
Sbjct: 734 KVHPKLLLDNWHLVETLMDLVMPLKKCTTATEKALNVLDNVL 775


>AL034364-3|CAA22253.1|  162|Caenorhabditis elegans Hypothetical
           protein W06D4.5 protein.
          Length = 162

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 199 GSTLALAEHAIHIRLQEPLVLQNFL 125
           G  LA  E ++HI LQEP + +N++
Sbjct: 131 GHPLAQNERSLHIFLQEPTIDKNYV 155


>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
            protein R10F2.1 protein.
          Length = 2779

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 196  STLALAEHAIHIRLQEPLVLQNFLQVNFVIFVS 98
            ST+ + EH   IRLQ+PLV +  L +  +  V+
Sbjct: 2486 STVKIEEHTGIIRLQKPLVSRRNLTIEQITVVA 2518


>Z70718-2|CAA94676.1|  373|Caenorhabditis elegans Hypothetical
           protein C04G2.2 protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +3

Query: 78  YLLMISTLTNMTKLTCKKFWR-----TRGSWSRIWIAC 176
           Y  M+ TL     L C K  R     TRG+WSRI I C
Sbjct: 98  YCYMVMTLLGKN-LKCLKNKRPKERFTRGTWSRIGIQC 134


>U80029-1|AAB37581.1|  167|Caenorhabditis elegans Hypothetical
           protein T20D4.13 protein.
          Length = 167

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 196 STLALAEHAIHIRLQEPLVLQNFLQVNFVIFVSVLIISKYGHEYTAQNYK 47
           S LA   H +     EP+ L+N  Q  +V F    I  KY H     + K
Sbjct: 60  SHLAAPSHEVLATQDEPIQLENDSQDKYVEFRYDPISGKYSHNVERHSEK 109


>AF125463-1|AAD12861.2|  263|Caenorhabditis elegans Hypothetical
           protein Y49F6C.6 protein.
          Length = 263

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 99  LTNMTKLTCKKFWRTRGSWSRIWIACSARASV 194
           L+   +L  ++  R RG+ S +W+A +AR +V
Sbjct: 116 LSPRIRLVLREHERCRGALSDVWVAGAARGAV 147


>AF098995-8|AAC67477.1|  306|Caenorhabditis elegans F-box b protein
           protein 18 protein.
          Length = 306

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 65  VLVAVLADDKYTDKYDKINLQEILENKRLLESYMDCVLGK 184
           VL++ L++ K  D YD I   +I+    +   + DC L K
Sbjct: 124 VLISSLSERKIEDIYDSIKELDIVALHMISSQFQDCNLLK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,775,044
Number of Sequences: 27780
Number of extensions: 146830
Number of successful extensions: 460
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)