Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0487
         (414 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8Y9Q2 Cluster: Lmo0471 protein; n=1; Listeria monocyto...    37   0.19 
UniRef50_A0CG84 Cluster: Chromosome undetermined scaffold_179, w...    31   9.3  

>UniRef50_Q8Y9Q2 Cluster: Lmo0471 protein; n=1; Listeria
           monocytogenes|Rep: Lmo0471 protein - Listeria
           monocytogenes
          Length = 336

 Score = 36.7 bits (81), Expect = 0.19
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = -3

Query: 247 TVPFYNYESR-SPRNELWNAKLHSFRPNASGEVLVILKQICTSNKYKYNSERL--EYIIC 77
           T  F NY     P  ++W  + +    N +GE +V++ +   +NK++Y++E +   YI+ 
Sbjct: 194 TKEFENYRHYWDPNEKMWKTRNYDLPTNNNGEPIVLVPKSFVTNKFQYDAEYVLKNYILE 253

Query: 76  SLIRNLQANFSE**LLKKXSFFSL 5
             +  L+A +    L+K  +   L
Sbjct: 254 EKLDELRAQYPSKRLIKSDALKKL 277


>UniRef50_A0CG84 Cluster: Chromosome undetermined scaffold_179,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_179,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 359

 Score = 31.1 bits (67), Expect = 9.3
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -3

Query: 253 NGTVPFYNYESRSPRNELWNAKLHSFRPNASGEVLVILKQICTSNKYKYNSERLE-YIIC 77
           N   P  N  S SP N++   +L     N + E+LV       + K  Y+S +++  +I 
Sbjct: 192 NTQFPSQNQRSISPSNQISKQELQKANRNNNKEILVPKGMQNQNQKVNYDSHQIDNQVIL 251

Query: 76  SLIRNLQ 56
             I+N+Q
Sbjct: 252 KQIKNIQ 258


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,622,855
Number of Sequences: 1657284
Number of extensions: 6580425
Number of successful extensions: 15714
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15708
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)