Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0487
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0048 + 833872-834122,834255-834314,834818-835112,835775-83...    27   4.5  
10_01_0089 + 1103841-1104152,1104809-1104946,1105527-1105631,110...    27   7.8  
06_01_0246 - 1856617-1856658,1856756-1856797,1856908-1857035,185...    27   7.8  
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575...    27   7.8  

>09_01_0048 +
           833872-834122,834255-834314,834818-835112,835775-835894
          Length = 241

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 187 ILRSRVHFGDSGTRNYKKGQSRSRRD 264
           IL   +H+GDSG +  K  Q+ SR D
Sbjct: 43  ILTDAIHYGDSGRQRLKVPQALSRID 68


>10_01_0089 +
           1103841-1104152,1104809-1104946,1105527-1105631,
           1106403-1106577,1107124-1107398,1108222-1108391,
           1108508-1109084
          Length = 583

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 211 RNELWNAKLHSFRPNASGEVLVILKQICTSNKYKYNSERLEYIIC 77
           +  +W      +    S E ++ LK +  SN YKY S  LE+  C
Sbjct: 179 KGNIWQKAKFLYGTEFSPEEILNLKLMIQSNVYKYLSTLLEWREC 223


>06_01_0246 -
           1856617-1856658,1856756-1856797,1856908-1857035,
           1857311-1857518,1857617-1857797,1858227-1858271,
           1858565-1858918,1860282-1860325
          Length = 347

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 413 GSCYTKNFTNVLLLIKHPSNVINIK*RKCFEKNIY 309
           G+CYT    N  +  KHPS+V +     C+ K IY
Sbjct: 278 GNCYTCKIGNKSM--KHPSDVNSYVGGHCYIKGIY 310


>03_02_0124 -
           5749183-5749773,5750628-5751160,5751191-5753035,
           5753632-5753820,5753911-5754013,5754087-5754269,
           5754392-5754484,5755031-5755219,5756133-5756327
          Length = 1306

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 238 FYNYESRSPRNELWNAKLHSFRPNA 164
           ++N++ R P+   +N K HS  PN+
Sbjct: 729 YFNHQGRDPQMRHFNGKEHSSSPNS 753


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,839,627
Number of Sequences: 37544
Number of extensions: 156083
Number of successful extensions: 313
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)