Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0487
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47173| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_45163| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)                 27   6.1  
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)                   27   8.1  
SB_16116| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_47173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 315 IFFKTFPLFYVYHIRWMFNEE*DI 386
           IF   FP F + HI+W F E+ D+
Sbjct: 26  IFIFEFPQFIIPHIQWRFREDPDL 49


>SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 282 TMMKFKINGIYIFFKTFPLFYVYHIRWMFNEE*DI 386
           T+M+     +   F+ FP F + HI+W F E+ D+
Sbjct: 16  TVMRINSRKLISIFE-FPQFIITHIQWRFREDPDL 49


>SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 282 TMMKFKINGIYIFFKTFPLFYVYHIRWMFNEE*DI 386
           T+M+     +   F+ FP F + HI+W F E+ D+
Sbjct: 70  TVMRINSQKLISIFE-FPQFIIPHIQWRFREDPDL 103


>SB_45163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 271

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 404 YTKNFTNVLLLIKHPSNVINIK*RKCFEKNIYTINFEFHHC*VL 273
           YT+ FT  +    +PS V+ ++ R C  K++   N   H C V+
Sbjct: 194 YTRKFTAKV----NPSGVVMVRLRPCCPKDVAMANVACHTCDVI 233


>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
          Length = 459

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 135 CFNITNTSPLAFGRKLCN 188
           C +ITNTS +AFG+ L N
Sbjct: 275 CLDITNTSVIAFGKYLNN 292


>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
          Length = 378

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 139 KQICTSNKYKYNSERLEYIIC 77
           K+ C   K  YNSERL  IIC
Sbjct: 12  KKFCELAKDTYNSERLACIIC 32


>SB_16116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 28  LKVIIRKS*LVNYELKNILYIQDVQSYIYIY*RYKFALI*LTPHRSRLAENCA-ILRSRV 204
           L V I +S +  YE   I  +  V S + +     FA   +T    R  +NC+ ILR+ V
Sbjct: 17  LHVSISRSSVTRYEFPLIKRVVPVISCLQML----FANFAITVREFR--DNCSLILRTYV 70

Query: 205 HFGDSGTRNYK 237
           H  +SGT  YK
Sbjct: 71  HMFESGTCMYK 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,954,354
Number of Sequences: 59808
Number of extensions: 198034
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)