Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0487
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80443-4|AAD32268.1|  202|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z71266-2|CAA95841.2|  233|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AC006714-20|AAK29723.2|  281|Caenorhabditis elegans Serpentine r...    27   4.1  
AC006714-16|AAK29721.3|  281|Caenorhabditis elegans Serpentine r...    27   4.1  
U58738-3|AAQ81272.1|  349|Caenorhabditis elegans Apex-related ge...    27   7.1  
U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related ge...    27   7.1  
U50143-1|AAB02199.1|  349|Caenorhabditis elegans ARG-1 protein.        27   7.1  

>U80443-4|AAD32268.1|  202|Caenorhabditis elegans Hypothetical
           protein C24A11.1 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 199 WNAKLHSFRPNASGEVLVILKQICTSNKYKYNSERLEYIICSLIRNLQANFSE 41
           W+    +FR   +    VI KQIC + K+K + E L+    S +    A+ S+
Sbjct: 116 WSEPRGNFRKEKANYNKVINKQICRARKFKQDGEDLQACSKSNLPKTPADLSD 168


>Z99286-3|CAH60794.1|  320|Caenorhabditis elegans Hypothetical
           protein Y7A9C.9 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 218 PGLVIIKRDSPVLDGTTLVIPNNDEIQN*WYIYFFQNISFILCLS 352
           P  VI  + +   D  TL+ P    + N   I F+  +SFI+C+S
Sbjct: 36  PFYVIAFKLNRTRDRNTLLFPTVGHVYNMVTITFYLFVSFIICMS 80


>Z71266-2|CAA95841.2|  233|Caenorhabditis elegans Hypothetical
           protein R06C7.2 protein.
          Length = 233

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = -3

Query: 241 PFY--NYESRSPRNELWN-AKLHSFRPNASGEVLVILKQICTSNKYKYNSERLEYIICSL 71
           P Y  N  ++S RN LWN A +    P  SG     +KQI  S KYK +   ++  + + 
Sbjct: 160 PMYVANEYAKSGRN-LWNEAIIADAIPEVSGPEAARMKQITDSIKYKESGFLIDRRVNAS 218

Query: 70  IRNLQANFS 44
              +Q+N S
Sbjct: 219 ALIIQSNCS 227


>AC006714-20|AAK29723.2|  281|Caenorhabditis elegans Serpentine
           receptor, class z protein9 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 291 KFKINGIYIFFKTFPLFYVYHIRWMFNEE 377
           K  I+G+++F     LF VY   + FN E
Sbjct: 9   KILISGVFLFIANIILFLVYRKAYRFNSE 37


>AC006714-16|AAK29721.3|  281|Caenorhabditis elegans Serpentine
           receptor, class z protein8 protein.
          Length = 281

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 291 KFKINGIYIFFKTFPLFYVYHIRWMFNEE 377
           K  I+G+++F     LF VY   + FN E
Sbjct: 9   KILISGVFLFIANIILFLVYRKAYRFNSE 37


>U58738-3|AAQ81272.1|  349|Caenorhabditis elegans Apex-related genes
           protein 1, isoformb protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 226 ESRSPRNELWNAKLHSFRPNASG-EVLVILKQICTSNKY 113
           + R+P +  WN  L        G  V V L+ +CTSN Y
Sbjct: 98  QHRAPSDTKWNTGLPIVIETTLGFNVTVHLRNVCTSNYY 136


>U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related genes
           protein 1, isoforma protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 226 ESRSPRNELWNAKLHSFRPNASG-EVLVILKQICTSNKY 113
           + R+P +  WN  L        G  V V L+ +CTSN Y
Sbjct: 98  QHRAPSDTKWNTGLPIVIETTLGFNVTVHLRNVCTSNYY 136


>U50143-1|AAB02199.1|  349|Caenorhabditis elegans ARG-1 protein.
          Length = 349

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 226 ESRSPRNELWNAKLHSFRPNASG-EVLVILKQICTSNKY 113
           + R+P +  WN  L        G  V V L+ +CTSN Y
Sbjct: 98  QHRAPSDTKWNTGLPIVIETTLGFNVTVHLRNVCTSNYY 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,607,858
Number of Sequences: 27780
Number of extensions: 166858
Number of successful extensions: 382
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)