Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0487
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53440.1 68418.m06641 expressed protein                             29   1.2  
At1g17150.1 68414.m02091 glycoside hydrolase family 28 protein /...    27   3.8  
At2g36895.1 68415.m04525 expressed protein                             26   8.7  
At1g68400.1 68414.m07814 leucine-rich repeat transmembrane prote...    26   8.7  
At1g48990.1 68414.m05492 glycine-rich protein / oleosin contains...    26   8.7  
At1g09810.1 68414.m01101 expressed protein contains Pfam profile...    26   8.7  

>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 157 HRSRLAENCAILRSRVHFGDSGTRNYKKGQSRSRRDD 267
           H+S+   +    +++ H    GT NY + +SR +RDD
Sbjct: 165 HKSKAGSDKTESKAQDHARSPGTENYTEKRSRRKRDD 201


>At1g17150.1 68414.m02091 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           Pfam profile PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 402

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 251 VLDGTTLVIPNNDEIQN*WYIYF 319
           V+DGT L  PNND+I+   +I F
Sbjct: 93  VIDGTLLAPPNNDDIKKEIWINF 115


>At2g36895.1 68415.m04525 expressed protein 
          Length = 232

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 138 FNITNTSPLAFGRKLCNFAFQSSFRGLRD 224
           F+I  T+ L  GR+LC F F  S   L D
Sbjct: 136 FDIAATNGLDMGRRLCIFGFCRSVEMLSD 164


>At1g68400.1 68414.m07814 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GB:AAA33715
           from [Petunia integrifolia]
          Length = 670

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 316 FFSKHFLYFMFITLDGCLMRSKT 384
           FF+KH L  + I L  CL+ S +
Sbjct: 6   FFNKHLLLSLLILLQSCLLSSSS 28


>At1g48990.1 68414.m05492 glycine-rich protein / oleosin contains
           Pfam profile: PF01277 oleosin
          Length = 169

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 268 RRPV*NGT-VPFYNYESRSPRNELWNAKLHSFRPNASGEVLVIL 140
           +RP+ N T VP  N  +  P + L    L S  PN SG++   L
Sbjct: 13  QRPIYNSTTVPRSNTTTNHPLSSLLRQLLQSQSPNHSGQLFGFL 56


>At1g09810.1 68414.m01101 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 428

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -3

Query: 244 VPFYNYESRSPRNELWNAKLHSFRPNASGEVLVILKQIC 128
           VP+  Y + +  N  W+ + H+ +P  +GE   +++  C
Sbjct: 107 VPYSGYINGNSNNGFWDQRDHNKKPERNGESDYLVELKC 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,746,613
Number of Sequences: 28952
Number of extensions: 143924
Number of successful extensions: 308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)