Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0486
         (321 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.30 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   0.69 
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   1.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   8.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   8.4  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 155 SNYLHKLCHXYHQTNI*NKNNYYSLIIHKNHL 250
           +NY +   + Y+  N  N NNY   + +KN++
Sbjct: 320 NNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYI 351


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.4 bits (48), Expect = 0.69
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 164 LHKLCHXYHQTNI*NKNNYYSLIIHKNHL 250
           +  L + Y  +N  N NNY   + +KN++
Sbjct: 82  ISSLSNNYKYSNYNNYNNYNKKLYYKNYI 110


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 164 LHKLCHXYHQTNI*NKNNYYSLIIHKNHL 250
           +  L + Y+ +N  N NNY  L  + NH+
Sbjct: 82  ISSLSNNYNYSNY-NNNNYKQLCYNINHI 109


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 206 NKNNYYSLIIHKNHL 250
           N NNY   + +KN++
Sbjct: 107 NNNNYNKKLYYKNYI 121


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 103 YYTKLTRNGI 132
           Y+T++ RNGI
Sbjct: 312 YFTQINRNGI 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,755
Number of Sequences: 438
Number of extensions: 1046
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)