Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0480
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    32   0.28 
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    28   3.4  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    28   4.5  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    28   4.5  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    28   4.5  
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical...    27   7.9  
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.      27   7.9  

>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 129  ERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKK 296
            E + K   KC  N   C   ++K+  K  + ++  C KC    K+ AK + +  KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKCAKNVQKMCKK 1320


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 168 QGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDE 320
           + P T +++  KD +    E HC +C   Q    +  +  I+K + +LW E
Sbjct: 679 ENPKTDDIQS-KDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCE 728


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 168 QGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDE 320
           + P T +++  KD +    E HC +C   Q    +  +  I+K + +LW E
Sbjct: 676 ENPKTDDIQS-KDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCE 725


>U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical
           protein F46C8.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 293 EDTPGVMGRVHYFLRPSRKISNFFQRFS*VL 385
           E+ P V+GR H  L+P     N++++F  V+
Sbjct: 155 ENDPRVIGRAHSILKPYGLAGNYWEKFGEVM 185


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 126 NERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQL 278
           NE+L +  +   L +     +LKKI+DK+         K  DK K + ++L
Sbjct: 20  NEKLTRDVSDAKLLKEDAEIKLKKIRDKLNGEHSEKLGKLNDKYKAVQEEL 70


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
           defective protein 19,isoform a protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
 Frame = -3

Query: 407 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 255
           L++  +Y  L K    S++ S   LR+ K  +    LR     LLNSLR +   LLL   
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609

Query: 254 FISTFRTMGLQSF-WNFIFN 198
           FI  F  +G+Q F   F FN
Sbjct: 610 FIVIFALLGMQVFGGKFNFN 629


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
           defective protein 19,isoform b protein.
          Length = 1877

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
 Frame = -3

Query: 407 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 255
           L++  +Y  L K    S++ S   LR+ K  +    LR     LLNSLR +   LLL   
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609

Query: 254 FISTFRTMGLQSF-WNFIFN 198
           FI  F  +G+Q F   F FN
Sbjct: 610 FIVIFALLGMQVFGGKFNFN 629


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
           calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
 Frame = -3

Query: 407 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 255
           L++  +Y  L K    S++ S   LR+ K  +    LR     LLNSLR +   LLL   
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609

Query: 254 FISTFRTMGLQSF-WNFIFN 198
           FI  F  +G+Q F   F FN
Sbjct: 610 FIVIFALLGMQVFGGKFNFN 629


>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
           protein Y75B8A.22 protein.
          Length = 1353

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 180 TAELKKIKDKIPEALETHCAKCTDKQKQMAK 272
           TAE KK +++  + +E H  K T K+K  ++
Sbjct: 240 TAEQKKTEEEFRKIIENHVVKETQKRKSFSR 270


>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
          Length = 1353

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 180 TAELKKIKDKIPEALETHCAKCTDKQKQMAK 272
           TAE KK +++  + +E H  K T K+K  ++
Sbjct: 240 TAEQKKTEEEFRKIIENHVVKETQKRKSFSR 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,619,298
Number of Sequences: 27780
Number of extensions: 211798
Number of successful extensions: 700
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)