Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0478
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    29   0.87 
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    27   2.6  

>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = +3

Query: 177 VLQYQITSSETL--AYLCTISFCLLLSINVAIIL 272
           VLQY++  +E +    LC+++ CLLL+I   I+L
Sbjct: 201 VLQYKVPGNELIYRENLCSVAQCLLLAIPSPIVL 234


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -2

Query: 654 SLRQLNNFYIFL*YIL*TMLNEQQS*INFIIIHRITYVTVVKIILHTALFFLSHCFRL 481
           SL  +N+  +F  Y+L ++   Q+S  N+I    I    + +   +  L +L+ CF L
Sbjct: 318 SLSWVNSIPVFGKYLLLSVEERQKSLENYISSETIKEALMTRTYRNPFLIYLTRCFSL 375


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 180 LQYQITSSETLAYLCTISFCLLLSINVAIILCN 278
           L +Q+T ++ ++ L  IS C+  +I +A++L N
Sbjct: 293 LGFQVTKAKQVSDLTDISLCMDRAIGIALVLRN 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,442,637
Number of Sequences: 5004
Number of extensions: 45174
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)