Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0478
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.0  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.7  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.7  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 535  DCYICYPVNN 564
            DCY+CY  N+
Sbjct: 1067 DCYVCYSPND 1076


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 526 NFNDCYICYPVNNYKIYSTLLF 591
           N+N+ Y  Y  NNY  Y  L +
Sbjct: 333 NYNNNYNNYNNNNYNNYKKLYY 354


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 76  KLHIKDTRLKLRKKNETKG 20
           K+  ++ R+K +K+N++KG
Sbjct: 315 KIWFQNRRMKWKKENKSKG 333


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 207 TLAYLCTISFCLLLSINVAIILCNEYSLF 293
           T+  L  + +C L+  +   ILC++ + F
Sbjct: 4   TIVSLLCVIYCALVHADTVAILCSQKAGF 32


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 207 TLAYLCTISFCLLLSINVAIILCNEYSLF 293
           T+  L  + +C L+  +   ILC++ + F
Sbjct: 4   TIVSLLCVIYCALVHADTVAILCSQKAGF 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,833
Number of Sequences: 438
Number of extensions: 3059
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)