Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0477
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.30 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.8  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.4  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.4 bits (53), Expect = 0.30
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 YNDKIFIYNNFYN*FMLYKKYIL 316
           YN+K    NN YN  + YK YI+
Sbjct: 100 YNNKYNYNNNNYNKKLYYKNYII 122


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 55  SAEIRIYCFKNFFFFLALLMFIDYDIYILI 144
           SAE+RI       FFL LL +  Y    LI
Sbjct: 275 SAEVRIAKVAFTIFFLFLLAWTPYATVALI 304


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 11  GNLIFVSKNKHLLVAL 58
           G  I +SKN+HL V L
Sbjct: 547 GRPISISKNQHLFVEL 562


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 55  SAEIRIYCFKNFFFFLALLMFIDYDIYILI 144
           SAE+RI       FFL LL +  Y    LI
Sbjct: 275 SAEVRIAKVAFTIFFLFLLAWTPYATVALI 304


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 64  IRIYCFKNFFFFLALLMFIDYDIY 135
           I+   F  FFF   +   +D+D Y
Sbjct: 7   IKYINFDRFFFIEGMTNVLDFDYY 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,752
Number of Sequences: 438
Number of extensions: 848
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)