Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0476
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    30   0.32 
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    26   7.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.2  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   9.2  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 591 STECTIKCLCDLYPVQLLNW*WRYIYSTFTLHN-IRLPYSLLITCSF 454
           ST  T+K L  L+ V    + +R++YS  T  + + L + + + CSF
Sbjct: 97  STVHTVKALSPLFTVLAYRFMFRHVYSAMTYFSLVPLTFGVTLACSF 143


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 175 FFQILNVKWLSCKIANMSLKPHSFSPLNRVFKLVNSK 285
           FF I NV WL   I  +  K +  SPL     L+ S+
Sbjct: 409 FFPITNVLWLHYLIHQLLHKKNLSSPLTETETLMRSR 445


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 664  LLLLVCWSIVICIFLFSELCLVLIFHRMYNQMFV 563
            L+L +C++I IC+ ++  L     FH  +N   V
Sbjct: 1305 LILSICYTINICVKVYG-LSFYYFFHSFWNMFDV 1337


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 281 EFTSLKTRLRGEKLCGLSDIFAILQ-ESHLTF 189
           EFT L+ RL G+KL  L++   ++Q E+H  F
Sbjct: 318 EFTFLRNRLYGKKLLKLNEHEEMIQNETHERF 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,499
Number of Sequences: 5004
Number of extensions: 68818
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)