Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0476
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 667 MLLLLVCWSIVICIFLFSELCLVLIFHRMY 578
           M + L+CW    C+ + +  C   I  R +
Sbjct: 278 MGVFLICWVPFFCVNIVTSYCKTCISGRAF 307


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 658 LLVCWSIVICIFLFSELCLVLIFHRMYNQMFV 563
           +L+ WS  +CI L   + L++   R   + F+
Sbjct: 395 VLIGWSAFLCISLVYIIMLIIFIPRNIYENFI 426


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +1

Query: 259 RVFKLVNSKSIRCHENLEKNYHHNLPTSNVQYN 357
           ++   +++K+I  + N + NY++    +N  YN
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYN 112


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 603 KHSSENKKIQITIDQQTKSNNM*VNNGMI 689
           KH S+N     T D+   S+ + +++ M+
Sbjct: 225 KHESDNSDYSHTTDENRHSSTLDIDHKML 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,482
Number of Sequences: 438
Number of extensions: 4998
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)