Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0476
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42540.1 68416.m04412 hypothetical protein                          29   3.5  
At3g14260.1 68416.m01805 expressed protein contains Pfam profile...    28   8.0  

>At3g42540.1 68416.m04412 hypothetical protein 
          Length = 208

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 190 NVKWLSCKIANMSLKP 237
           N+ W+ CKI N SLKP
Sbjct: 93  NIMWIICKIGNKSLKP 108


>At3g14260.1 68416.m01805 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567);
           expression supported by MPSS
          Length = 208

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = -3

Query: 224 IFAILQESHLTFKIWKKYHNKKTSSAI*ME*TKLKF*NIELLMMPIPNKTDL*LHR*MSG 45
           +F + ++    FK W+ Y   ++SSA     TKL++  ++  +  +PNK     +R  +G
Sbjct: 77  LFTLRRQKFGLFKTWEGY---RSSSATVESTTKLEYFRVKNNVFQVPNKDSSSSYRVNAG 133

Query: 44  IKRN 33
             RN
Sbjct: 134 SCRN 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,513
Number of Sequences: 28952
Number of extensions: 326313
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)