Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0475
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.2  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    27   4.3  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    26   5.7  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   9.9  

>SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 44

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -2

Query: 769 LFTIIKKKGLSVWGVIIYFLILKTFKRCCIS 677
           +F+I+K++ + + G+IIYFL+  +  RC  S
Sbjct: 1   MFSIVKEE-VGLPGMIIYFLLQISISRCVFS 30


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 557 FIVFLIMFHYFNHYLNIKFV 616
           F++F+ ++ Y  HYLN K +
Sbjct: 280 FVIFVFVWIYMRHYLNFKIM 299


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 269 GTSFGGCCIMF*LRHSINV 325
           GTS G CCI F  R SI+V
Sbjct: 132 GTSLGLCCISFDKRSSISV 150


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 59  YYMRLYLNFSIYTIKAGF 112
           Y+++LY+NFS     AGF
Sbjct: 275 YFLQLYINFSFTATGAGF 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,013
Number of Sequences: 5004
Number of extensions: 58187
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)