Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0475
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   7.1  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   7.1  
U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical p...    28   9.4  

>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 523 FDFLIYKLVLLFHCLFNHV 579
           F+F+++  VL FHC+F  V
Sbjct: 215 FNFMVFFFVLFFHCIFTFV 233


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 523 FDFLIYKLVLLFHCLFNHV 579
           F+F+++  VL FHC+F  V
Sbjct: 215 FNFMVFFFVLFFHCIFTFV 233


>U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical
           protein ZC404.13 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 509 IVAHISIS*FINWSYYFIVFLIMFHYFNHYLNIKFVIMVLSARKF 643
           +V  +SI+ +IN+  +F VF  +  YFN      F+I    + KF
Sbjct: 286 VVGGLSINDYINYFQFFSVFTNLLAYFN--TTTSFIIYSTLSSKF 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,353,628
Number of Sequences: 27780
Number of extensions: 320474
Number of successful extensions: 616
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)