Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0475
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58100.1 68418.m07270 expressed protein                             30   2.2  
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ...    29   3.8  
At3g13850.1 68416.m01749 LOB domain family protein / lateral org...    28   8.7  

>At5g58100.1 68418.m07270 expressed protein 
          Length = 945

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 79  KLQHLYD*SRF-RLDIFLKAIY-L*APRLIKHHYPHILKLIYNFSYHRI 219
           KL H+++ +R  ++   L   Y +   + ++HH P I ++ YNFS H I
Sbjct: 134 KLDHMFEHTRVPQIKEVLNPFYKINIEKEVQHHLPIISRVNYNFSVHAI 182


>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
           similar to glucan synthase GB:AAD11794 [Filobasidiella
           neoformans var. neoformans]
          Length = 1931

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = +2

Query: 539 INWS-YYFIVFLIMFHYFNHYLNIKFVIMVLSARKFLF 649
           IN++ YY +VFL+++     YL + F ++VLSA KF F
Sbjct: 662 INFNDYYTVVFLLVWEKQQTYLYLLFWLVVLSA-KFSF 698


>At3g13850.1 68416.m01749 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD22) identical to
           SP|Q9LRW1 Putative LOB domain protein 22 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 268

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 64  YEIIFKLQHLYD*SRFRLDIFLKAIYL*APRLIKHHY--PHI 183
           Y II KLQ+  + +R  L+I L+ + +   R  +HH+  PHI
Sbjct: 112 YGIIKKLQYQIEYTRNELEIVLQQLAMFRDRAHQHHHQEPHI 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,188
Number of Sequences: 28952
Number of extensions: 280492
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)