Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0474
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.85 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.85 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 370  SSHRLHVSWQTP*RFRDEGFLQG 302
            +S  L VSWQ P      G +QG
Sbjct: 1124 TSQSLQVSWQPPPNTHSNGIIQG 1146


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 370  SSHRLHVSWQTP*RFRDEGFLQG 302
            +S  L VSWQ P      G +QG
Sbjct: 1120 TSQSLQVSWQPPPNTHSNGIIQG 1142


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +3

Query: 63  TDRFGAHGLHGC-GLSGCVS 119
           T++ G HGLHG  GL G  S
Sbjct: 129 TNQTGLHGLHGLHGLHGLSS 148


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,892
Number of Sequences: 438
Number of extensions: 3519
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)