Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0473
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   4.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.9  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 388 IFGYRGTVENFNMVCVLTL 444
           IFGY+GT  N  +V V T+
Sbjct: 282 IFGYQGTYVNLVIVKVFTI 300


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 34  TLVSDSVLSLKSPQVRRAIYQLDN 105
           TL++D+ +S+K P   R    LDN
Sbjct: 160 TLLADNSVSIKDPWFPRHASDLDN 183


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 579 CKSDKEIEGGEL-RWVKMTNNSSLPMDAIVGGYENEPLYIARAIHFNSLTPGKY 737
           C + K  +G EL ++++  +   L  D        +       IHF  + PGKY
Sbjct: 500 CDAMKPTKGTELLKYLRKVDFEGLSGDKFKFDKNGDGPARYNIIHFKQIEPGKY 553


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 372 FIEFKDFWISWHSG 413
           F+   D WISW  G
Sbjct: 381 FLTRGDLWISWEEG 394


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 25  YFKTLVSDSVLSLKSPQVRRAIYQLDNI*CQLINWKSW 138
           YF T ++  + +L S + R A  Q      ++I  +SW
Sbjct: 318 YFSTTINPILYNLMSIKYRNAFKQTICCKTRIIGRRSW 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,249
Number of Sequences: 438
Number of extensions: 5480
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)