Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0473
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17710.1 68416.m02260 F-box family protein contains F-box dom...    33   0.16 
At5g61340.1 68418.m07697 expressed protein                             31   0.87 
At5g53510.1 68418.m06650 oligopeptide transporter OPT family pro...    28   8.1  
At3g51420.1 68416.m05632 strictosidine synthase family protein s...    28   8.1  

>At3g17710.1 68416.m02260 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 368

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 24/92 (26%), Positives = 31/92 (33%)
 Frame = -3

Query: 560 YWGSFNHPSNLSFIYYCRDMKTYKTNFFCILKFYTSHGFNVRTQTILKFSTVPRYPKIFE 381
           YW + NHP  L +     D        FC+L      G N     + K        + FE
Sbjct: 205 YWLAHNHPETLEYFIETFDFSMEIFKPFCLLPCRKDFGSNELVLAVFKEDRFSLLKQCFE 264

Query: 380 LDKRSWWVFVVIINNITL*YVYKFKYLPNIQL 285
             K   WV  + I+        KF  LP   L
Sbjct: 265 TTKIEIWVTKMKIDREEEVVWIKFMTLPTTNL 296


>At5g61340.1 68418.m07697 expressed protein
          Length = 326

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 551 SFNHPSNLSFIYYCRDMKTYKTNFFCIL 468
           S NH ++ S ++Y R +KTY  NFF +L
Sbjct: 111 SNNHSADSSSVFYLRLLKTYVCNFFFLL 138


>At5g53510.1 68418.m06650 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 741

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 365 WWVFVVIINNITL*YVYKFKYLPNIQL 285
           WW +V+++ NI L     F Y   +QL
Sbjct: 420 WWFYVILVLNIALIMFISFYYNATVQL 446


>At3g51420.1 68416.m05632 strictosidine synthase family protein
           similar to hemomucin [Drosophila
           melanogaster][GI:1280434], strictosidine synthase
           [Rauvolfia serpentina][SP|P15324]; contains
           strictosidine synthase domain PF03088
          Length = 370

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 779 SMSPRHKHFVCCSKVFSRCQR 717
           SMSP   HFV C  +  RC +
Sbjct: 222 SMSPDQTHFVFCETIMRRCSK 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,624,295
Number of Sequences: 28952
Number of extensions: 383197
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)