Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0472
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    29   1.1  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   7.6  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   7.6  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -1

Query: 720 DEVDLRRQSVHARIGVILG*S-RRSLFLARSVYVVDAKLFQN*SHIDEVKERLKVGGIIE 544
           D  DL+   ++  +G + G   +R    A +    D  +F   S   ++K+RLK G +I 
Sbjct: 205 DHTDLQNL-LNREVGHLSGGELQRFAIAAVATQKADVYMFDEPSSYLDIKQRLKAGRVIR 263

Query: 543 SKVMISNY 520
           S +  +NY
Sbjct: 264 SLLATTNY 271


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 682 DRCNPRVESEIPLLGQERLRGRCKIVPELISYRRS*RTPESWR 554
           +  N R E+   +LG++RL     +  +L S++R  RT   WR
Sbjct: 333 EELNKRYENMKVILGRDRLDELYGVPQKLRSFQRFLRTYPEWR 375


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 567 LKVGGIIESKVMISNYSSFAAVPSYGNEDVAAG 469
           +K GGI+  +  +SNY SF  V +    DV  G
Sbjct: 586 IKPGGIVNYQACVSNYRSFINVTA--RSDVLVG 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,390,589
Number of Sequences: 5004
Number of extensions: 68867
Number of successful extensions: 182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)