Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0472
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   8.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 731  LVYDLSSVSEWVPERTYYRVMPSSTPKSRC 820
            ++  + S S W P R  Y  +    P  RC
Sbjct: 1672 VIRSIRSHSTWDPRRHMYEELNHCAPNRRC 1701


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 774 RSGTHSETDERSYTKMTQDEVDLRRQSVHARIGVIL 667
           +SG + E  ER+YTK+  +   L +     R G  L
Sbjct: 750 KSGEYEELRERAYTKILSNGTLLLQHVKEDREGFYL 785


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 774 RSGTHSETDERSYTKMTQDEVDLRRQSVHARIGVIL 667
           +SG + E  ER+YTK+  +   L +     R G  L
Sbjct: 746 KSGEYEELRERAYTKILSNGTLLLQHVKEDREGFYL 781


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 360 HVEESNVFVHGCRHFLFIYLISF 292
           +++ S ++  GC  FLF  ++ F
Sbjct: 290 YIKASEIWFLGCTIFLFAAMVEF 312


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +1

Query: 85   KTKRNNIVTQVNCNHRQ*YYEYNNGKIGNEY*GVPLTIIS 204
            K  + +I T ++C+ +  YYE    ++ ++  G P +++S
Sbjct: 953  KAVKKHITTTIDCSTQSEYYEL---EVKDQKNGKPPSVVS 989


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,284
Number of Sequences: 438
Number of extensions: 5384
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)