Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0472
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969...    82   5e-16
At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969...    78   6e-15
At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969...    78   8e-15
At2g25510.1 68415.m03054 expressed protein                             28   6.6  
At5g43710.1 68418.m05344 glycoside hydrolase family 47 protein s...    28   8.8  
At5g10770.1 68418.m01252 chloroplast nucleoid DNA-binding protei...    28   8.8  
At1g73170.1 68414.m08466 expressed protein                             28   8.8  

>At5g56750.1 68418.m07083 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 346

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 50/118 (42%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
 Frame = +1

Query: 451 EERVRTSRGDILVAVRGDRSKRAIITYHDLGLXXXXXXXXXXXXVDMRSIL-EQFCIYHV 627
           E RV+T+ G + V V GDR K A+ITY DL L             +  S+L   FCIYH+
Sbjct: 21  EHRVKTASGVVSVIVYGDREKPALITYPDLALNHMSCFQGLFFCPEAASLLLHNFCIYHI 80

Query: 628 NAPGQEEG-SPTLPEDYTYPSMDALASQIDFVLGHFGIRSFIGFGVGAGANILSRYAI 798
           + PG E G +P  P D + PS + LA QI  VL  FG+   +  GV AGA IL+ +A+
Sbjct: 81  SPPGHELGAAPICPND-SVPSAENLADQILEVLNFFGLGVVMCMGVTAGAYILTLFAM 137


>At2g19620.1 68415.m02292 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 347

 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
 Frame = +1

Query: 451 EERVRTSRGDILVAVRGDRSKRAIITYHDLGLXXXXXXXXXXXXVDMRSIL-EQFCIYHV 627
           E  V+T  G + V V GD+ K A+ITY D+ L             +  S+L   FCIYH+
Sbjct: 21  EHHVKTCHGSVSVVVYGDQEKPALITYPDVALNYMSCFQGLFLCPEAVSLLLHNFCIYHI 80

Query: 628 NAPGQEEGSPTLPEDYTYPSMDALASQIDFVLGHFGIRSFIGFGVGAGANILSRYAIINP 807
           + PG E G+  +  +   PS++ LA QI  VL  F + + +  G+ AGA ILS +AI + 
Sbjct: 81  SPPGHEFGAAPVCSNDPSPSVEDLADQILEVLNFFSLEAVMCMGITAGAYILSLFAIKHK 140

Query: 808 QK 813
           ++
Sbjct: 141 ER 142


>At5g11790.1 68418.m01376 Ndr family protein similar to SP|O23969
           Pollen specific protein SF21 {Helianthus annuus};
           contains Pfam profile PF03096: Ndr family
          Length = 344

 Score = 77.8 bits (183), Expect = 8e-15
 Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
 Frame = +1

Query: 451 EERVRTSRGDILVAVRGDRSKRAIITYHDLGLXXXXXXXXXXXXVDMRSIL-EQFCIYHV 627
           E  V T+ G + VAV GD  K A+ITY D+ L             +  S+L   FCIYH+
Sbjct: 21  EHLVETTYGPVCVAVCGDPDKPALITYPDIALNYMFCFQGLLFCPEASSLLLHNFCIYHI 80

Query: 628 NAPGQEEGSPTLPEDYTYPSMDALASQIDFVLGHFGIRSFIGFGVGAGANILSRYAI 798
           +  G E G+P +  D    S D LA QI  VL +FG+ + +  GV AGA IL+ +A+
Sbjct: 81  SPLGHELGAPMISVDAPLLSADDLADQIVEVLNYFGLGAVMCMGVTAGAYILTLFAM 137


>At2g25510.1 68415.m03054 expressed protein
          Length = 103

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 160 CRCCIHNIIVCGYNLLA*RCYFVLFLSLFHSIY 62
           C C +H  +VCG+ L      FV+F SL +  Y
Sbjct: 69  CACFLHCGLVCGFCLCLPMHVFVIFYSLSNGRY 101


>At5g43710.1 68418.m05344 glycoside hydrolase family 47 protein
           similar to mannosyl-oligosaccharide
           1,2-alpha-mannosidase IB [Mus musculus][SP|P39098]
          Length = 624

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 561 VGGIIESKVMISNYSSFAAVPSYGNE 484
           +GG++ + ++ S+Y++   +PSY NE
Sbjct: 128 LGGLLSAHLIASDYATGMRIPSYNNE 153


>At5g10770.1 68418.m01252 chloroplast nucleoid DNA-binding protein,
           putative similar to CND41, chloroplast nucleoid DNA
           binding protein [Nicotiana tabacum] GI:2541876; contains
           Pfam profile PF00026: Eukaryotic aspartyl protease
          Length = 474

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 521 IARLLRSPRTATRMSPREVRTLSS---THAPSLCKRLSDGK 408
           ++ LL S  ++  +SPR   T SS   TH    C RL++GK
Sbjct: 38  VSSLLPSSSSSCVLSPRASTTKSSLHVTHRHGTCSRLNNGK 78


>At1g73170.1 68414.m08466 expressed protein
          Length = 666

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 701 RLRSTSSWVILVYDLSSVSEWVPERTYYRVMPSSTPKSR 817
           R+ S    ++  Y+L S  +W  +  Y R++P ST + R
Sbjct: 586 RIVSLQGKLVRKYNLRSERKWRGDEMYLRILPYSTEEDR 624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,640,235
Number of Sequences: 28952
Number of extensions: 361966
Number of successful extensions: 922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)