Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0470
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    31   0.20 
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    27   3.2  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   9.9  

>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 487 TGVVIKRKDRKNGYDVYCFIIKQGKNDMEKVKQTSEATKTSVST 356
           T V+I   D KN   + C I +   N+M  +K +S+  K++ ST
Sbjct: 172 TDVLICSNDYKNALWILCLIKETQHNEMGNIKLSSQTAKSNSST 215


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 374 CCFRSLFYFFHIILPLFYNEAIYVVPIFSILSFDYYT 484
           C F S  ++  I+LP  Y +  + V  F I++   YT
Sbjct: 350 CIFTSFVFWIWIVLPGLYYQNYWQVAHFPIMTNSIYT 386


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 276 FPDFFLPGVPNTASKPEPLASLIMHLTVLTDVFVASEVCFTFSISFFP--CFIMKQYTSY 449
           F DF L    NT+SK     + ++ L       +  E  +  ++  +   C +M+ +T  
Sbjct: 415 FADFGLARF-NTSSKSANYTNRVITLWFRPPELLLGETAYDTAVDIWSAGCIVMELFTGK 473

Query: 450 PFF 458
           PFF
Sbjct: 474 PFF 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,490
Number of Sequences: 5004
Number of extensions: 56561
Number of successful extensions: 144
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)