Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0470
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)          31   0.85 
SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)                30   2.0  
SB_7425| Best HMM Match : MAM (HMM E-Value=0.45)                       30   2.0  
SB_10703| Best HMM Match : Homeobox (HMM E-Value=4.6e-08)              29   2.6  
SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_11187| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-10)
          Length = 1163

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 359  TH*CFCCFRSLFYFFHIILPLFYNEAIYVVPIFSILSFDYYTSLSWHSVFFI 514
            TH  F    +  YFF II   F+   I     FSI++  Y+ S+  H  FF+
Sbjct: 988  THHFFFSIITHHYFFSIITHHFFFSIITHHFFFSIITHHYFFSIITHHYFFV 1039



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +2

Query: 359  TH*CFCCFRSLFYFFHIILPLFYNEAIYVVPIFSILSFDYYTSLSWHSVFF 511
            TH  F    +  YFF II   ++   I    IFSI++  Y+ S+  H  FF
Sbjct: 925  THHYFFSIITDHYFFSIITHHYFFVIITHHYIFSIITHHYFFSIITHHFFF 975



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 359  TH*CFCCFRSLFYFFHIILPLFYNEAIYVVPIFSILSFDYYTSLSWHSVFF 511
            TH  F    +  +FF II   F+   I     FSI++  Y+ S+  H  FF
Sbjct: 961  THHYFFSIITHHFFFSIITHHFFFSIITHHFFFSIITHHYFFSIITHHFFF 1011



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +2

Query: 359  TH*CFCCFRSLFYFFHIILPLFYNEAIYVVPIFSILSFDYYTSLSWHSVFFI 514
            TH  F    +  YFF II   ++   I     FSI++  Y+ S+  H  FF+
Sbjct: 1024 THHYFFSIITHHYFFVIITHHYFFSIITHHFFFSIITDHYFFSIITHHYFFV 1075


>SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)
          Length = 318

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 391 QTSEATKTSVSTVRCIINEAKGSGLL 314
           +T +AT+T ++  R +INE +G GLL
Sbjct: 194 KTRQATRTVLNNARDVINELRGGGLL 219


>SB_7425| Best HMM Match : MAM (HMM E-Value=0.45)
          Length = 300

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 305 KHGEQARAFSFVNNAPNSTH*CFCCFRSLFYFFHII 412
           K G Q R   FV    NS+H    C +S  +++HII
Sbjct: 121 KTGNQGRNSDFVQLNVNSSHPFKLCLKSKLHYYHII 156


>SB_10703| Best HMM Match : Homeobox (HMM E-Value=4.6e-08)
          Length = 531

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 389 LFYFFHIILPLFYNEAIYVVPIFSILSFDYYTSLSWHSVFFIKNQQTLN 535
           +F FF   LP         VP+   +S+  ++SL+W+S       +T N
Sbjct: 194 VFLFFKETLPTEKRSCKLSVPLAECISYSCFSSLAWNSPLHFSLTRTFN 242


>SB_34467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 524

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 290 EKIREEESYRNG*FRSIPTTSTNAQEVCRLLYTPAKKK 177
           +++REE + RNG F  +P +ST +    +  ++ A+ K
Sbjct: 408 QRVREEWALRNGAFEIVPGSSTPSSSTTKASWSIAETK 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,107,614
Number of Sequences: 59808
Number of extensions: 372601
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)