Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0470
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.86 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.1  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 407 IILPLFYNEAIYVVPIFSILSFDYYTSLSWHSVFFIKN 520
           I+L +FY   ++ +   +    DYY +L+   +++I N
Sbjct: 21  IVLLIFYGSIMFSMTQVNKEECDYYQNLNLGEIYYIYN 58


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 383 RSLFYFFHIILP 418
           R+L+YFF++I+P
Sbjct: 193 RTLYYFFNLIVP 204


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 383 RSLFYFFHIILP 418
           R+L+YFF++I+P
Sbjct: 193 RTLYYFFNLIVP 204


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 383 RSLFYFFHIILP 418
           R+L+YFF++I+P
Sbjct: 193 RTLYYFFNLIVP 204


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 383 RSLFYFFHIILP 418
           R+L+YFF++I+P
Sbjct: 193 RTLYYFFNLIVP 204


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 383 RSLFYFFHIILP 418
           R+L+YFF++I+P
Sbjct: 193 RTLYYFFNLIVP 204


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 383 RSLFYFFHIILP 418
           R+L+YFF++I+P
Sbjct: 193 RTLYYFFNLIVP 204


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 383 RSLFYFFHIILP 418
           R+L+YFF++I+P
Sbjct: 261 RTLYYFFNLIVP 272


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 383 RSLFYFFHIILP 418
           R+L+YFF++I+P
Sbjct: 261 RTLYYFFNLIVP 272


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 383 RSLFYFFHIILP 418
           R+L+YFF++I+P
Sbjct: 230 RTLYYFFNLIVP 241


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 458 KKWVRRILLHYKTGEE*YGKSKTDFGS 378
           +KWV    + Y T ++ YG    +F S
Sbjct: 194 EKWVNSSEIFYTTSQQYYGHFAGNFSS 220


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 505 IFYKKSTNTQQIAMATKSTSNY 570
           + Y  +    ++ +ATK+T NY
Sbjct: 112 VLYNNADGNFEVTLATKATLNY 133


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +2

Query: 395 YFFHIILPLFYNEAIYVVPIFSILSFDYY 481
           +F ++I  + ++   ++  + ++L FDYY
Sbjct: 2   HFNNVIKYINFDRFFFIEGMTNVLDFDYY 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,248
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 20
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)