Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0470
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18470.2 68414.m02305 zinc finger (C3HC4-type RING finger) fa...    29   3.7  
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa...    29   3.7  
At2g26480.1 68415.m03177 UDP-glucoronosyl/UDP-glucosyl transfera...    28   4.9  
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro...    28   6.5  

>At1g18470.2 68414.m02305 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 423

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 39  CRQFVNNITTITYNKKLLCYIYLLFVKSDYLLFVKFWVL 155
           CR+ + +I  +  +  L C+  LL +K D+ +   +W++
Sbjct: 3   CRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMV 41


>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 467

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 39  CRQFVNNITTITYNKKLLCYIYLLFVKSDYLLFVKFWVL 155
           CR+ + +I  +  +  L C+  LL +K D+ +   +W++
Sbjct: 3   CRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMV 41


>At2g26480.1 68415.m03177 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 452

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 448 YDVYCFIIKQGKNDMEKVKQTSEATKTSVSTVRCIINEAKGSGLL 314
           YD + +  ++   DM   K     +  + S  RC++ E + +GLL
Sbjct: 106 YDEFVYFPRRVAEDMNLPKMVFSPSSAATSISRCVLMENQSNGLL 150


>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 753

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 380 FRSLFYFFHIILPLFYNEAIYVV---PIFSILSFDYYTSLSWHSVFFIKNQQTLN 535
           F     FF+IILP+FY    Y     P ++   FD +T   +++   I NQ+T N
Sbjct: 303 FGGFIIFFYIILPIFYWSNAYEAKKFPFYTSHPFD-HTGQRYNTT-RILNQKTFN 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,462,993
Number of Sequences: 28952
Number of extensions: 266284
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)