Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0466
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1258 + 25244863-25245282,25246419-25246568,25246665-252468...    32   0.53 
02_04_0084 - 19579104-19579230,19580323-19580417,19580578-195807...    28   6.5  

>07_03_1258 +
           25244863-25245282,25246419-25246568,25246665-25246877,
           25246979-25247068,25247311-25247424,25247881-25248150,
           25248251-25248407,25248691-25248741,25248742-25248819,
           25249357-25249457,25249832-25250002,25250136-25250210,
           25251527-25251793
          Length = 718

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 565 NRGFLKNLVMYTNVHTIKELPRKGCKTSLNIISEIENW 678
           N GF K +++    H +KE  R+G K S    + +ENW
Sbjct: 244 NSGFSKEVLLQGTSHPLKEKGRQGEKLSFRHEATVENW 281


>02_04_0084 -
           19579104-19579230,19580323-19580417,19580578-19580719,
           19581155-19581189,19581493-19581632,19581678-19581770,
           19584007-19584244
          Length = 289

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 212 YNSPTEIKSELTKTCKTIFDFSERIILPTGGNFLKVYPSNLSKLCLKNVS 361
           Y  P     ++TK+ K  F    R+ILP      +V PS LS    K +S
Sbjct: 204 YLCPVRRWKDITKSQKRCFVSGSRLILPMACVSFQVIPSCLSAARFKEIS 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,503,923
Number of Sequences: 37544
Number of extensions: 280962
Number of successful extensions: 564
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)