Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0466
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)                       29   2.9  
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)          29   2.9  
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)          29   2.9  
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   8.8  

>SB_51217| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 652

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/52 (28%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
 Frame = +2

Query: 221 PTEIKSELTKTCKTIFDFSERIILPTG--GNFLKVYPSNLSKLCLKNVSLKI 370
           P++   +L+  C  IFDF+E++++P     +F+ +Y SN+     +N+S+++
Sbjct: 234 PSDSAFDLSGLC--IFDFAEKVMVPKDQVDDFIDIYVSNIQS--TENISVQL 281


>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
          Length = 351

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 415 CPCRLIYIRPHNGKCSHCSWTCHGQSHAT 501
           C CR    +  +GKC H S  C+G+S  T
Sbjct: 72  CACRSAEFKCPDGKCVHPSKFCNGESDCT 100


>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
          Length = 147

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 415 CPCRLIYIRPHNGKCSHCSWTCHGQSHAT 501
           C CR    +  +GKC H S  C+G+S  T
Sbjct: 72  CACRSAEFKCPDGKCVHPSKFCNGESDCT 100


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 418  PCRLIYIRPHNGKCSHCSWTCHGQSHAT 501
            PC +   R  +G+C   SW C G +  T
Sbjct: 2327 PCNVSEFRCTSGECVPASWRCDGDNDCT 2354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,681,978
Number of Sequences: 59808
Number of extensions: 353097
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)