Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0466
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   2.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.9  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   6.7  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   6.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.9  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +1

Query: 433 YIRPHNG----KCSHCSWTCHGQSHATVHYYKSSSI 528
           ++R H G    KC  CS++C  +S    H    S++
Sbjct: 7   HLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSHSNV 42


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +1

Query: 220 TNRNKERINKNLQNNL*FFRENYTTYRR 303
           T  N    N N  NN  +   NY  Y++
Sbjct: 89  TIHNNNNYNNNNYNNYNYNNNNYNNYKK 116


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 481 GMSMSNGSTYHCGAVCISAYKGNKKTASL 395
           GM+       HC  +C+ A + N K+  L
Sbjct: 32  GMNQCQAVNGHCSHLCLPAPRINSKSPLL 60


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -2

Query: 481 GMSMSNGSTYHCGAVCISAYKGNKKTASL 395
           GM+       HC  +C+ A + N K+  L
Sbjct: 32  GMNQCQAVNGHCSHLCLPAPRINSKSPLL 60


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 397 LEIISSCIIYFQRNVF*AKLAKI*GIHFQ 311
           L I +SC+I F  +   +K +K   +H Q
Sbjct: 246 LSISASCVIAFATSALVSKDSKFNMVHIQ 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,060
Number of Sequences: 438
Number of extensions: 4036
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)