Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0465
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    27   4.1  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   7.1  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.4  

>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 259 CPPELLILIIRARP--YVSVTEISISRNSIINLK 354
           CP  LL++I  ARP   +++T ++I   + + LK
Sbjct: 116 CPVGLLLVIFEARPEVIINITSLAIKSGNAVVLK 149


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 661 VHLISYRIKEYICMLPFTSLRSVDVEDDTKTIHHK 765
           V  I Y ++   C + F      DV+ D K IH K
Sbjct: 146 VQPIRYMLRHKSCYVKFYEAECTDVDADKKVIHIK 180


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 496  YFRNTVMCSLMAL---LVHEKIWR*NIGNSIKLNNAVTSRP 383
            Y R  ++C+LMAL      +K+++ N+     +N   ++RP
Sbjct: 1138 YRRKAILCNLMALSLPFTQDKLFKANVYFDFAMNLYASARP 1178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,699
Number of Sequences: 5004
Number of extensions: 58923
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)