Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0462
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)             28   9.3  

>SB_22536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 443 SEGDLTTQEQLLRE*IYYRIGIATHCED-PARN 538
           +E D T+ E L+R+  +  +GI + CED P +N
Sbjct: 357 NETDTTSSEHLVRDKDFVHLGIKSPCEDSPCKN 389


>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +2

Query: 236 KLQECRLNEIAPSMCVFDTIKSSSDRDRDTFLPLRDYWWPGG 361
           K + C    + P +CV    K +    RD    + + WWP G
Sbjct: 825 KYKSCADKGVNPKLCVCSKHKKALTSKRDLRAEVLNVWWPLG 866


>SB_21128| Best HMM Match : Arg_repressor (HMM E-Value=1.9)
          Length = 381

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 362 LSSFTRTGGRAKAQPGGVGFANSYPSASEGDL-TTQEQLLRE*IY 493
           L+S +  GG++  +PG     +S   + EG++    EQL R+ +Y
Sbjct: 31  LASESENGGQSSKKPGVSSLLSSLKGSKEGEVKNIAEQLTRDRVY 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,183,502
Number of Sequences: 59808
Number of extensions: 308408
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)