Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0461
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    42   9e-05
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    36   0.006
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    27   2.6  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    27   3.5  
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    26   4.6  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    26   6.1  
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    25   8.1  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   8.1  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   8.1  

>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 32/147 (21%), Positives = 65/147 (44%)
 Frame = -2

Query: 604 WNNVHGVSMSAFAKHLRKNKSTKPEILNIEQKDLLGDEVALCWINLREDSASDLNEFSIQ 425
           W++V+G   S   K + K    +P +  +++  +  +   +  ++L+     DL  FS  
Sbjct: 182 WDDVYGFDFSPIKKDVWK----EPLVDTVDRIAVNTNSCVILDLDLKTVKKEDL-AFSSP 236

Query: 424 HVVGAKKSGSYEGLCLWFECNFPSMSETKDENRIILDTSPNSLATHWKQTAIVLPQEVEV 245
             + A ++        WF+  F +  +      I   T P S  THWKQT     +++ V
Sbjct: 237 FEITATRNDFVHAFLAWFDIEFSACHKP-----IKFSTGPFSRYTHWKQTVFYTHKDLTV 291

Query: 244 EEGEPIAFQLSMKRDTEHNRRYNLQMT 164
           + GE I   ++ K    ++R  ++ ++
Sbjct: 292 KAGEYIRGTITCKPAEGNHRELDIDIS 318


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 5/151 (3%)
 Frame = -2

Query: 604 WNNVHGVSMSAFAKHLRKNKSTKPEILNIEQKDLLGDEVALCWINLREDSASDLNEFSIQ 425
           W++V+G  M+       K  S +     + Q  +    V     N+      D++ F+  
Sbjct: 383 WSDVYGFKMNGMKDASYKGVSVQV----VPQTYVNAKPVVFARFNMHTCKVQDVS-FTSP 437

Query: 424 HVVGAKKSGSYEGLCLWFECNFPS-----MSETKDENRIILDTSPNSLATHWKQTAIVLP 260
             +     G      LWF+  F +     + E  DE      T P    THWKQ  ++L 
Sbjct: 438 FSLIIDNEGPLCAFTLWFDTYFTTKRTQPIPEAIDE-ACGFTTGPQGTPTHWKQCVLLLR 496

Query: 259 QEVEVEEGEPIAFQLSMKRDTEHNRRYNLQM 167
               +++G  +   +S  ++ ++NR  ++ +
Sbjct: 497 NRPFLQKGTRVEGTISFSKNKKNNRDLDISV 527


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -2

Query: 367 CNFPSMSETKDENRIILDTSPNSLATHWKQTAIVLPQEVEVEEGEPIAFQLSMKRDTEH 191
           C  P M +  D N I L ++P SL     +     PQE       P   +L+M+++  H
Sbjct: 199 CTKPEMMQFNDGNDIPLRSNPVSLWKSLPEGETFTPQEAAKILKWPSIEELNMRQNATH 257


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +3

Query: 354 LGKLHSNHRHKPS*EPDF----LAPTTCWMLNSFKS--DALSSLKLIQQSATSSPSKSFC 515
           L ++H    H PS   ++    L     W L+SF+   +   SL    +    S  ++  
Sbjct: 69  LTRIHDITSHLPSSIEEYSVYSLLHERLWSLHSFEDIHEIFISLGNYIEGVYDSEEEAPH 128

Query: 516 SIFKISGLVDLFLRRCLAK 572
            +F  S L+ +FLR+C+ +
Sbjct: 129 MLFSSSSLLSIFLRKCVVE 147


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 478 WINLREDSASDLNEFSIQHVVGAKKSGS 395
           W+       SDLN  ++ HV G K  GS
Sbjct: 65  WLRCIGYQPSDLNRLNVIHVAGTKGKGS 92


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 385 LCLWFECNFPSMSETKDENRIILDTSPNSLATHWKQTAIVL 263
           LCLW  C+FP +S     + I   ++   LA      ++ L
Sbjct: 126 LCLWDACHFPPLSPYSSFSSIYWSSTVPELALRNPNISVAL 166


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 459 SSLKLIQQSATSSPSKSFCSIFKISGLVDLFLRRCLAKADIDTPCTLFH 605
           SSL L+QQ  +S+PS           +VD F+   L +  +  PC + H
Sbjct: 278 SSLSLLQQLTSSNPSSRIIVFLPTISMVD-FVGGVL-ENHLKIPCFILH 324


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 346 ETKDENRIILDTSPNSLATHWKQTAIVLPQEVEVEEGEPIAFQLSMKR 203
           E KD N I+L  S +     WK T   L  ++  +  +P++  ++  R
Sbjct: 401 EVKDNNPILLSLSSDGTVRGWKYTGEQL-FKIRCDSKQPLSMSVTDSR 447


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 144 TASGSSNVICKLYLRLCSVSLFMLSWKAIGSPSSTSTSCGNTIAVCFQCV 293
           T    SN + K   +L    LF+L W+           C + IA+CF C+
Sbjct: 43  TLEDPSNFVAKDGTKLVQAPLFLLVWQ--------KEICLSIIAICFACL 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,571
Number of Sequences: 5004
Number of extensions: 60763
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)