Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0461
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 63 2e-10
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 50 2e-06
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 46 3e-05
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 44 2e-04
07_03_1645 + 28348897-28349100,28349263-28349334,28350113-283502... 33 0.30
02_01_0322 + 2192257-2192310,2192452-2192730,2192768-2192921,219... 31 0.68
11_01_0755 - 6343084-6345172,6345526-6346367 29 4.8
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 28 6.4
01_01_0018 + 139150-140415 28 8.4
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Frame = -2
Query: 604 WNNVHGVSMSAFAKHLRKNKSTKPEILNIEQKDLLGDEVALCWINLREDSASDLNEFSIQ 425
W++V+G++MSA +K S +P I I +++L + I+ A +L F+ +
Sbjct: 210 WSDVYGINMSALVPLAKKFTSEEPSIEIIGGENVLSWPFVVKHIDCYTFKAEELKSFTTK 269
Query: 424 HVVGAKKSGSYEGLCLWFECNFPSMSETKD--------------------ENRIILDTSP 305
+ V + G LWFE F S D E+ ++L T+P
Sbjct: 270 YKVSSMMLAPIHGFGLWFEVEFNGPSNPTDKSPSDLNPLDVIRKKRRRGSEDPVVLSTAP 329
Query: 304 NSLATHWKQTAIVLPQEVEVEEGEPIAFQLSMKRDTEHNRRYNLQM 167
THW QT + P +EV++ + I + + + E+ R N+Q+
Sbjct: 330 EDEPTHWHQTILYFPDPIEVKQDQIIEGSVKVSQSEENPRFLNIQL 375
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 50.0 bits (114), Expect = 2e-06
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 6/130 (4%)
Frame = -2
Query: 604 WNNVHGVSMSAFAKHLRKNKSTKPEILNIEQKDLLGDEVALCWINL---REDSASDLNEF 434
W NV+G MS K + N + P + + +D++ + L +L +E+ + F
Sbjct: 434 WENVYGFDMSCIGKEVTGNSARFPVVDILASEDIVTETAVLNSFDLATMKENEMDFTSSF 493
Query: 433 SIQ-HVVGAKKSGSY--EGLCLWFECNFPSMSETKDENRIILDTSPNSLATHWKQTAIVL 263
++ G +SG G+ LWF+ F + E + L TSP S THW QT
Sbjct: 494 ELRLSESGVSQSGVTWCYGIILWFDTGFTN--RFCKEKPVNLSTSPFSTPTHWSQTIFTF 551
Query: 262 PQEVEVEEGE 233
+ + + + E
Sbjct: 552 EEPIAMAKEE 561
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 46.0 bits (104), Expect = 3e-05
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%)
Frame = -2
Query: 592 HGVSMSAFAKHLRKNKST---KPEILN-IEQKDLLGDEVALCWINLREDSASDLNEFSIQ 425
+GV+M+ K R K I N + ++G + I+ + ++ E Q
Sbjct: 211 YGVNMNVLTKAYRAEHEKYYLKSAIWNNLHPNQVIGQAAVIKEIDCLTATVDEIREVRAQ 270
Query: 424 HVVGAKKSGS-YEGLCLWFECNFPSMSETKDENRIILDTSPN-SLATHWKQTAIVLPQEV 251
+ K + L WF+ +F + + L T+P+ + THW Q +L +
Sbjct: 271 VTMPIKLDMTRLAALAGWFDVHFRGSKQNPATQEVELSTAPDVNGGTHWGQQVFLLTPPL 330
Query: 250 EVEEGEPIAFQLSMKRDTEHNRRYNLQMT 164
+V EG+ + +M R E++R +++ T
Sbjct: 331 KVNEGDNVKVSFTMVRSKENHRLMDMEFT 359
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/168 (19%), Positives = 68/168 (40%), Gaps = 24/168 (14%)
Frame = -2
Query: 604 WNNVHGVSMSAFAKHLRKNKSTKPEILNIEQKDLLGDEVALCWINLREDSASDLNEFSIQ 425
W +V+G+ MS+ ++ +P + I +++L + ++ A +L +
Sbjct: 218 WQDVYGIKMSSMMPLAKQCAFMEPSVETISGENVLTWPSVVAQVDCYTIQAPELETITAT 277
Query: 424 HVVGAKKSGSYEGLCLWFECNF------------------------PSMSETKDENRIIL 317
+ G WF+ F PS + K + I+L
Sbjct: 278 FNYTSMLQAPLHGFAFWFDVEFNGPVRQRSKKQANQCLDGNTQDASPSNKKKKADAPIVL 337
Query: 316 DTSPNSLATHWKQTAIVLPQEVEVEEGEPIAFQLSMKRDTEHNRRYNL 173
T+P THW+QT + L + +E+++ + I +++ + +H R N+
Sbjct: 338 STAPEDAPTHWQQTLLYLFEPIELKKDQNIEGSVTISQSQQHARFLNI 385
>07_03_1645 +
28348897-28349100,28349263-28349334,28350113-28350266,
28350973-28351116,28351213-28351316,28351401-28351499,
28351582-28351651,28352127-28352223,28352443-28352497,
28353507-28353590,28353851-28353928,28354027-28354130,
28354212-28354635,28355311-28355346
Length = 574
Score = 32.7 bits (71), Expect = 0.30
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = -2
Query: 388 GLCLWFECNFPSMSETKDENRIILDTSPNSLATHWKQTAIVLPQEVEVEEGEPIAFQLSM 209
GL WF+ F + + L T+P S THW Q +L Q + V G+ I +L +
Sbjct: 410 GLACWFDVLFNGSTVQR-----WLTTAPGSPTTHWYQLRCILSQPLYVMAGQEITGRLHL 464
Query: 208 KRDTEHNRRYNLQMTL 161
+ + Y + +T+
Sbjct: 465 VAHSAQS--YTIYLTM 478
>02_01_0322 +
2192257-2192310,2192452-2192730,2192768-2192921,
2193010-2193602
Length = 359
Score = 31.5 bits (68), Expect = 0.68
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +3
Query: 306 GLVSKIIRFSSFVSDILGKLHSNHRHKPS*EPDFLAPTTC-WMLNSFKSDALSSLKLIQQ 482
GL SK R ++F + + G+ SNHR+ P+ PD L C ++L + D L L +
Sbjct: 261 GLQSK--RRAAFPAHLQGRFGSNHRYAPADPPDLLNYEGCEFLLIAASDDVEEELGLELE 318
Query: 483 SATSSPSK---SFCSIFKISGLVDLF 551
+ T + + + K S LV +F
Sbjct: 319 TETDAEADLEGDGAAAAKCSDLVKMF 344
>11_01_0755 - 6343084-6345172,6345526-6346367
Length = 976
Score = 28.7 bits (61), Expect = 4.8
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 456 LSSLKLIQQSATSSPSKSFCSIFKISGLVDLFLRRC-LAKADIDTPCTLFHLLY 614
LSSLKL Q + P I + GL +L L L K D+ CTL HLLY
Sbjct: 769 LSSLKL-QGELSRFPQ----FITSLCGLTELCLSSTNLNKEDLSNVCTLHHLLY 817
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 510 FCSIFKISGLVDLFLRRCLAKADIDTPCTLFHLLYSEGMLQV 635
FCS++KIS + F C +D +F + +GML V
Sbjct: 188 FCSLYKISNIQFQFFITCAKCEWLDNKHVVFGRVLGDGMLAV 229
>01_01_0018 + 139150-140415
Length = 421
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -2
Query: 364 NFPSMSETKDENRIILDTS--PNSLATHWKQTAIVLPQEVEVEEGEPIAFQLSMKRDTEH 191
N S++ ++ N IL S P+ L + T +V+P+ V++ +A + ++ EH
Sbjct: 291 NQASLAPSEHFNPAILQESSCPSFLYNNNNDTIVVVPEGVDISGTMDVAGLVINGQEEEH 350
Query: 190 NRRYNLQ 170
R+ N++
Sbjct: 351 ERKTNVE 357
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,249
Number of Sequences: 37544
Number of extensions: 359096
Number of successful extensions: 909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -