Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0461
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   6e-06
SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)                     31   0.92 
SB_57677| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)                    30   2.1  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         29   3.7  

>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
 Frame = -2

Query: 604 WNNVHGVSMSAFAKHLRKNKSTKPEILNI-EQKDLLGDEVALCWINLREDSASDLNEFSI 428
           W + +G   S      ++   ++P   ++   +D +     +  ++  + +  DL   + 
Sbjct: 279 WRDQYGFDYSPAISKAKQEFLSRPIYNHVFNYEDCISTPQPIIKLDTLKTARHDLEHSAH 338

Query: 427 QHVVGAKKSGSYEGLCLWFECNFPSM--SETKDENRIILDTSPNSLATHWKQTAIVLPQE 254
                 ++     G C WF+  F ++   E K  + ++L T P    THWKQ   +L   
Sbjct: 339 GFEFVIEQDSMLYGFCSWFDVLFGNIPHGEDKRNSAVVLSTGPQCDLTHWKQDLFLLDMP 398

Query: 253 VEVEEGEPIAFQLSMKRDTEHNRRYNL 173
           + V+E + I   + +KR+ +  R  ++
Sbjct: 399 LPVQENDLIKGSICLKRNPDFRRHLSV 425


>SB_18446| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 571

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 255 SCGNTIAVCFQCVAKLFGLVSKIIRFSSFVSDILGKLHSNHRHKPS*EPDFLAPTTCWM 431
           SC    +VC QC+   F  VSK+  FSS     + +L S+       E +      CW+
Sbjct: 134 SCQRLASVCIQCMKVSFSEVSKLEEFSSLNFSQVFELISSRDIIVQSEEEVCEAVICWV 192


>SB_57677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -2

Query: 331 NRIILDTSPNSLAT----HWKQTAIVLPQEVEV---EEGEPIAFQLSMKRDTEHNRRY 179
           NRII D +    AT      K+ + V+P  +E+   E G+ ++       ++EHNRRY
Sbjct: 204 NRIISDVTMRGSATVGKARGKKLSPVIPLTIEIPKAESGDQLSVLSQSDSESEHNRRY 261


>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
          Length = 942

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 559 LRKNKST-KPEILNIEQKDLLGDEVALCWINLREDSASDLNEFSIQHVVGAKKSG 398
           L KN+ T  P+++++ +   +  E   CW +L E+          Q VVG + SG
Sbjct: 150 LEKNRDTLSPDVVHVLRTSDVSVEQHSCWWHLSEEFMKQAKREQCQVVVGVEHSG 204


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 226 AFQLSMKRDTEHNRRYNLQMTLLDPEAVDHPQPCSCHMT 110
           A QLS  R ++ ++RY + +     +   HP   SCH T
Sbjct: 514 ATQLSTNRHSKTSKRYVIPLNSQPTDTQRHPSGMSCHST 552


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,940,444
Number of Sequences: 59808
Number of extensions: 439652
Number of successful extensions: 1105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)