Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0461
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.9  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.7  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 267 YYHRKWKWKKENQ 229
           + +R+ KWKKEN+
Sbjct: 318 FQNRRMKWKKENK 330


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 267 YYHRKWKWKKEN 232
           + +R+ KWKKEN
Sbjct: 56  FQNRRMKWKKEN 67


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 136 PQPCSCHMTKCI 101
           P+PC CH  +CI
Sbjct: 476 PEPCRCH-ARCI 486


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 136 PQPCSCHMTKCI 101
           P+PC CH  +CI
Sbjct: 476 PEPCRCH-ARCI 486


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 163 MSSVNCISGYVLY 201
           +SS+ CI GY++Y
Sbjct: 537 LSSMLCIPGYMIY 549


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 163 MSSVNCISGYVLY 201
           +SS+ CI GY++Y
Sbjct: 590 LSSMLCIPGYMIY 602


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,769
Number of Sequences: 438
Number of extensions: 3765
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)