Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0460
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      32   0.40 
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   30   1.6  
SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)        29   3.7  
SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2)           29   3.7  
SB_49989| Best HMM Match : GRP (HMM E-Value=2.3)                       29   4.9  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     28   6.5  
SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3)                      28   8.6  
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)               28   8.6  
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)              28   8.6  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = -1

Query: 431 HDGHQRCSLLYVRNHQAQRGSSYHVRHHHRGSR-AGSCGH---QCEGQPRSKHS 282
           H GH     +    HQ  +   +H  HHHR  +   S GH   +  G+  S HS
Sbjct: 416 HHGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHS 469


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -1

Query: 161  VRHNEQGRNEPRHSVPGHHDGRCSGTKLPQRGGMAED 51
            +RH   GR   R  VP HH GR      P    MA D
Sbjct: 1625 LRHLRHGRARHRLKVPAHHRGRHRKKATPSSTDMARD 1661


>SB_16656| Best HMM Match : Methyltransf_3 (HMM E-Value=1.2e-19)
          Length = 613

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 320 GHQCEGQPRSKHSRIWGEHRCRGH 249
           G   EG  RS++  +W  H+CR H
Sbjct: 152 GKALEGYVRSEYGNLWETHQCRPH 175


>SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2)
          Length = 127

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 163 GCGIMSRGVMSRGIVCRGIMTDDALGRNCRSVVVWQKTSVGGGQHG 26
           G G+M   VM  G++  G+M D  +G       V     +GGG  G
Sbjct: 57  GGGVMGGSVMGDGVIGGGVMDDSVMGGGVIGGSVMGDGVMGGGVMG 102


>SB_49989| Best HMM Match : GRP (HMM E-Value=2.3)
          Length = 181

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 386 QAQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIWGEHRCRGHERSQEK 231
           Q  RGS    + HHRGS      H+  GQ + +H R  G+ +    E  Q K
Sbjct: 102 QHHRGSG-QAKQHHRGSGQAKQHHRGSGQAK-QHHRGSGQAKQHHRESGQAK 151



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -1

Query: 386 QAQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIWGEHRCRGHER 243
           Q  RGS    + HHRGS      H+  GQ +  H    G  + + H R
Sbjct: 82  QHHRGSG-QAKQHHRGSGQAKQHHRGSGQAKQHHR---GSGQAKQHHR 125


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 383 AQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIW 273
           A  G+S+HV   H  S      H    Q  ++H R+W
Sbjct: 360 ASHGTSWHVMARHGTSWQVMASHGTSWQVMARHGRLW 396


>SB_58579| Best HMM Match : DMP1 (HMM E-Value=2.3)
          Length = 682

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = -1

Query: 710 SAADIYLH*VLVSSSLFTHK*HIHQSSVTIISNINRC*LFSNDGDHGVHGPRKHSRRER 534
           S  D YL+      +++ +K  I ++  T  S+  +C  +  DG +G HG R+   R R
Sbjct: 588 SNEDYYLN---SDENIYVNKEIIDENDFTESSDNLKCQSYEKDGANGYHGNREDLNRNR 643


>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
          Length = 91

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 356 RHHHRGSRAGSCGHQCEGQPRSKHSRIWGEH 264
           RHHHR S   + G     +PR K S   G++
Sbjct: 42  RHHHRSSSVPAHGRPQSTEPRLKQSTATGQN 72


>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
          Length = 269

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 356 RHHHRGSRAGSCGHQCEGQPRSKHSRIWGEH 264
           RHHHR S   + G     +PR K S   G++
Sbjct: 42  RHHHRSSSVPAHGRPQSTEPRLKQSTATGQN 72


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 281  DYAYSVADPHTGDHKSQHESRDGGAVHG 364
            D+AY   DPHT  HK  H  R  G + G
Sbjct: 1425 DFAYVARDPHTSKHKC-HMFRCHGNISG 1451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,738,771
Number of Sequences: 59808
Number of extensions: 355417
Number of successful extensions: 1265
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)