Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0459
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     26   0.22 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    26   0.22 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           26   0.22 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   0.91 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.91 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   4.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.4  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   8.4  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +2

Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 565
           PP      P  +   +P     N QPPV  S+      A++ P   P
Sbjct: 95  PPIHHQIRPPILHDTQPMCESLNTQPPVTSSSNILQNLADITPNVTP 141


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +2

Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 565
           PP      P  +   +P     N QPPV  S+      A++ P   P
Sbjct: 95  PPIHHQIRPPILHDTQPMCESLNTQPPVTSSSNILQNLADITPNVTP 141


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/47 (27%), Positives = 18/47 (38%)
 Frame = +2

Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 565
           PP      P  +   +P     N QPPV  S+      A++ P   P
Sbjct: 95  PPIHHQIRPPILHDTQPMCESLNTQPPVTSSSNILQNLADITPNVTP 141


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +2

Query: 428 PAPRYYGP--AQMTQIRPTTPRWNAQPP---VRPSTQAAS 532
           P+P+   P  A+   + PTTP   + PP   + PS  A+S
Sbjct: 78  PSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDASS 117


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +2

Query: 476 TTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
           TTPRW        +T     Y        P PR P
Sbjct: 51  TTPRWGCARASSATTMGGPRYGRAAAQGMPYPRFP 85


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 415  TIAPSSTTLLWTSSNDSNKTYNSKVECTAPCKA 513
            T++PS++     +S D   T   K + T PC A
Sbjct: 1298 TVSPSASVPAKIASFDDTFTTTYKEDVTLPCLA 1330


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 389 PSGASGFFVPSLPPAPRYYGPA 454
           P  A  FF     P PR Y PA
Sbjct: 304 PEEAETFFRELEAPCPRNYNPA 325


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 389 PSGASGFFVPSLPPAPRYYGPA 454
           P  A  FF     P PR Y PA
Sbjct: 304 PEEAETFFRELEAPCPRNYNPA 325


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 350  PFSACTEMLSALYGPPC 300
            P+SAC+E   A Y   C
Sbjct: 1275 PYSACSENAFAAYPGDC 1291


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 289 CNIQWFSSYNTSIH 248
           CN Q+  SYN  IH
Sbjct: 85  CNRQFTKSYNLLIH 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,535
Number of Sequences: 336
Number of extensions: 3339
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)