Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0459
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 173 1e-43
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 62 4e-10
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 59 3e-09
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 59 3e-09
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 54 1e-07
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 46 3e-05
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 46 3e-05
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 45 6e-05
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 45 6e-05
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 43 2e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 42 3e-04
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 42 4e-04
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 40 0.001
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 39 0.003
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 39 0.003
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 37 0.015
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 36 0.020
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 36 0.027
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 36 0.027
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 35 0.047
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 34 0.11
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 33 0.19
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 33 0.25
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 33 0.25
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 32 0.33
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83) 32 0.44
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.44
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 32 0.44
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 31 0.58
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 31 1.0
SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 31 1.0
SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2) 30 1.3
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_59647| Best HMM Match : Ank (HMM E-Value=0.00054) 29 2.3
SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3) 29 2.3
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59) 29 2.3
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 3.1
SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.1
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05) 29 3.1
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 29 4.1
SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69) 29 4.1
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7) 29 4.1
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018) 29 4.1
SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08) 29 4.1
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1) 28 5.4
SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027) 28 5.4
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_14241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 7.1
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 28 7.1
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 28 7.1
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 7.1
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 9.4
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09) 27 9.4
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 27 9.4
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 27 9.4
SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14) 27 9.4
SB_43344| Best HMM Match : Pkinase (HMM E-Value=6.9e-08) 27 9.4
SB_41641| Best HMM Match : PT (HMM E-Value=3.1) 27 9.4
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 173 bits (421), Expect = 1e-43
Identities = 93/163 (57%), Positives = 113/163 (69%), Gaps = 4/163 (2%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED- 178
ER E+K + E+ + ER+ R+QGVNLY+KNLDD IDDERLR+EF+P+GTI+SAKVM +D
Sbjct: 189 ERAAEVKAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDDK 248
Query: 179 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTXXXXXXXXXX 358
G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L
Sbjct: 249 GNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQLA--------AQ 300
Query: 359 XXXXXXXIFQPSGASGFFVPSLPPA-PRYYGP--AQMTQIRPT 478
+ G FF P +P PR+ P Q Q+RPT
Sbjct: 301 HMHRISGLRMHQGQRPFFTPQMPQVRPRWGMPPQQQQQQMRPT 343
Score = 81.4 bits (192), Expect = 5e-16
Identities = 38/85 (44%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 250
N+YVKN D +DDE++++ A G I S KVM + +G+SKGFGFV F +PEEA +AV +
Sbjct: 110 NVYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAVNVL 169
Query: 251 NGRIVGTKPLYVALAQRKEDRKAHL 325
NG+ +G + L+ A+++ +R A +
Sbjct: 170 NGKEIGGRRLWAGRAKKRAERAAEV 194
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 62.1 bits (144), Expect = 4e-10
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKA 238
G NL++ NLD +D++ L F+ FG I ++ D G SKGF F+ F+S + + A
Sbjct: 99 GANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAA 158
Query: 239 VTEMNGRIVGTKPLYVALAQRKEDR 313
+ MNG+ + +P+ V+ A +KE +
Sbjct: 159 IEAMNGQYLCNRPITVSYAFKKESK 183
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 59 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 232
R Q +YV LD+ + + + + F G + + + + +G+GFV F E+A
Sbjct: 9 RNQDATIYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDAD 68
Query: 233 KAVTEMNGRIVGTKPLYV 286
A+ MN V KP+ V
Sbjct: 69 YAIKVMNMIKVYGKPIRV 86
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 59.3 bits (137), Expect = 3e-09
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV 241
G NL++ +L D L + F PFGT+ SAKV + + SK FGFV + + A A+
Sbjct: 276 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAI 335
Query: 242 TEMNGRIVGTKPLYVALAQRKEDRKAH 322
MNG +G K L V L + K+ + +
Sbjct: 336 QHMNGFQIGAKRLKVQLKRPKDANRPY 362
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Frame = +2
Query: 41 KSERLTRYQG-VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCF 211
++ERL + G LYV +L I + ++ F PFGT+ S +++ E RSKG+GFV F
Sbjct: 231 EAERLKQPLGPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQF 290
Query: 212 SSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAH 322
E A +A+ +MNG + +PL + + D A+
Sbjct: 291 REAEAAKRAMEQMNGFELAGRPLKIGPVTERGDSSAY 327
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +2
Query: 47 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSP 220
E T + NL + + ++ E ++K F G +TS K++ + G+S G+ FV + +P
Sbjct: 19 ENGTSDERTNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNP 78
Query: 221 EEATKAVTEMNGRIVGTKPLYVALAQ 298
++A KAV EMNG + K L V+ A+
Sbjct: 79 DDANKAVREMNGARLQNKTLKVSFAR 104
Score = 48.8 bits (111), Expect = 4e-06
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +2
Query: 5 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DG 181
+ K LK F + S T + NLY+ L + +E + F PFG I ++KV+ + G
Sbjct: 94 QNKTLKVSFARPSS---TEIKNANLYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSG 150
Query: 182 RSKGFGFVCFSSPEEATKAVTEMNGR 259
+G GFV F EA A+ ++N +
Sbjct: 151 EGRGTGFVRFDKRCEAQTAIDDLNNK 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 244
QG ++V L L K F+P+G IT+ ++ L+ KG+GFV S+ EEA A+
Sbjct: 270 QGWCIFVYGLPQEATPLFLYKLFSPYGAITNIELKLD----KGYGFVNMSNYEEACHAIC 325
Query: 245 EMNG 256
+NG
Sbjct: 326 CLNG 329
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 253
Y+ NL ++D++ L ++F + KV+ E GR +GFGFV F S EE KA+ E +
Sbjct: 8 YIGNLSYSVDEQALEEKFHGCDVV-DVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66
Query: 254 GRIVGTKPLYVALAQRKEDRKA 319
G+ +P+ V AQ + +R A
Sbjct: 67 GQDFDGRPMKVNQAQPRGERGA 88
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKA 238
+G LY+ NL+ D+ + + F FG + ++ E GRS+GFGFV S ++ A
Sbjct: 7 RGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIAPA 65
Query: 239 VTEMNGRIVGTKPLYVALAQRKEDRK 316
+ +MN VG + + VALA K + +
Sbjct: 66 IEKMNQSSVGGRNITVALALDKTENR 91
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +2
Query: 116 RLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 289
RL + F PFGT+ SAKV ++ SK FGFV + + A A+ MNG +G K L V
Sbjct: 277 RLMQTFQPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQ 336
Query: 290 LAQRKEDRKAH 322
L + K+ + +
Sbjct: 337 LKRPKDANRPY 347
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVC 208
G NL++ +L D L + F PFGT+ SAKV + + SK FG C
Sbjct: 228 GSNLFIYHLPQEFTDADLMQTFQPFGTVISAKVFIDKQTNMSKCFGECC 276
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +2
Query: 71 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEM 250
+++++ NL D+E L F G + +V+ ++GRS+GFG+ F+S E+ KA+ E+
Sbjct: 180 MSVFLGNLSFDADEETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTSKEDYNKAL-EL 238
Query: 251 NGRIVGTKPLYVALAQRKEDR 313
NG + + + A K R
Sbjct: 239 NGEDCCGREIRINPANSKPSR 259
Score = 36.7 bits (81), Expect = 0.015
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +2
Query: 74 NLYVKNLD-DTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVT 244
+L V+NL DT D A F ++AKV+ E G S+GFGFV + E A K ++
Sbjct: 290 SLIVRNLSYDTTTDSL----GAAFEGCSNAKVIFDRESGESRGFGFVDYDDVETAKKVLS 345
Query: 245 EMNGRIVGTKPLYVALAQRKED 310
EM G V + + + A + +
Sbjct: 346 EMAGAEVDGRQVRLDFASPRTE 367
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
L V + + D+ R F ++ + K++ G S GFGFV +++ E+A KA+ ++
Sbjct: 49 LIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKL 108
Query: 251 NGRIVGTKPLYVALAQ 298
NG +G K L VA ++
Sbjct: 109 NGFTIGNKVLKVAFSR 124
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 238
+G NLYV N+ + + RK F +G I + +++ + G KG GFV + EA A
Sbjct: 131 KGANLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAA 190
Query: 239 VTEMNG 256
++ ++G
Sbjct: 191 ISSLSG 196
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Frame = +2
Query: 20 KRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KG 193
++K + + G LYV N+ + E + F G + +M + R KG
Sbjct: 258 QQKMTHMNGNKSQAPPGCTLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKG 317
Query: 194 FGFVCFSSPEEATKAVTEMNGRIVGTKPL 280
F FV ++ EEA A+ +NG + KPL
Sbjct: 318 FCFVTMATQEEAQNAIQTLNGFMYTNKPL 346
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEMN 253
YV L + +D++ L F PFG IT ++ ++ SK GFGFV F E+ A+ MN
Sbjct: 8 YVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMN 67
Query: 254 GRIVGTKPLYVALAQ 298
+ + + V LA+
Sbjct: 68 ESELFGRTIRVNLAK 82
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
++ +L + DE L + FA + + AK++ + +SKG+GFV F P + KA+ EM
Sbjct: 219 IFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREM 278
Query: 251 N 253
N
Sbjct: 279 N 279
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/73 (30%), Positives = 38/73 (52%)
Frame = +2
Query: 23 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGF 202
R F L S+ + +++ L+ +E L+ F+ +GTI +M DGRS+GFGF
Sbjct: 34 RPFALLPSKMSESEKLRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGF 93
Query: 203 VCFSSPEEATKAV 241
V + S + + +
Sbjct: 94 VTYESSDSVNEVL 106
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 250
NLY++NL D+ L F+ +G + S +++ + D SKG GF S E+ + + +
Sbjct: 180 NLYIQNLPQNCDEAMLENMFSKYGKVISTRILRDKDTNSKGVGFARMESAEKCEQVIKDF 239
Query: 251 NGRIV 265
N +++
Sbjct: 240 NKKML 244
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTE 247
NLY++ L D+ L + +GTI S K +L+ + KG+GFV F SP A KAV
Sbjct: 101 NLYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVAA 160
Query: 248 M 250
+
Sbjct: 161 L 161
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
+YV +++ + +E +R F PFG I + + + + KGF FV + PE A A+ +M
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQM 163
Query: 251 NGRIVGTKPLYV 286
NG ++G + + V
Sbjct: 164 NGVLLGGRNIKV 175
Score = 34.7 bits (76), Expect = 0.062
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
+Y+ ++ + ++ ++ F FG + + E G+ KG+GF+ + + + A A+ M
Sbjct: 201 IYIASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASM 260
Query: 251 N 253
N
Sbjct: 261 N 261
Score = 31.1 bits (67), Expect = 0.77
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Frame = +2
Query: 83 VKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFG-----FVCFSSPEEATKAVT 244
V++LD+ ++ E + E + FGT++ + E G + FV F+SP+E KA +
Sbjct: 506 VEDLDEDLEHE-VTDECSKFGTVSRVVIYKEKQGEEEDAEVIVKIFVEFTSPDETDKATS 564
Query: 245 EMNGRIVG 268
++GR G
Sbjct: 565 NLDGRWFG 572
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKE----FAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 244
+Y+KNL++ I E L+K F+ FG I V L+ + +G FV F AT A+
Sbjct: 9 IYIKNLNEKIKKEELKKSLYAIFSQFGPILDI-VALKTLKMRGQAFVVFKDIGSATNALR 67
Query: 245 EMNGRIVGTKPLYVALAQRKEDRKA 319
M G KP+ + A+ K D A
Sbjct: 68 SMQGFPFYDKPMRIQYAKGKSDAVA 92
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +2
Query: 173 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 310
E GR +GFGFV F S EE KA+ E +G+ + +P+ V A+ + D
Sbjct: 132 ETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAKPRGD 177
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Frame = +2
Query: 149 ITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 313
+ S KV+ E GR +GFGFV F S +E KA+ + +G + +P+ V AQ + +R
Sbjct: 35 LLSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQPRGER 91
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED----GRSKGFGFVCFSSPEEATKAVT 244
L ++NL + L++ F+ FG ++ A V + R GFGFV F++ +A KA+
Sbjct: 249 LIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALE 308
Query: 245 EMNGRIVGTKPLYVALAQRK 304
EMN + + +P+ V A K
Sbjct: 309 EMNAKKILGRPVAVDWAVPK 328
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE---DGRSKGFGFVCFSSPEEATKAVTE 247
++V+NL I D + F G + ++ + R +GFG+V F+ E+A KA +
Sbjct: 22 IFVRNLPYNITDAEFKSAFEEIGPLKRGFIVKDKDNQNRCRGFGYVTFALEEDALKA--K 79
Query: 248 MNGRIVGTKPLYVALAQRKEDRK 316
N + + +P+++ +++K K
Sbjct: 80 DNIKSIKGRPIHLDFSEKKARTK 102
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +2
Query: 14 ELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSK 190
E++ ++L S + Q +Y+++ I L F P+G I ++ + G+SK
Sbjct: 45 EIQHSIQELLSHKEEHDQRT-IYIRDFRPDIRKSSLESVFGPYGAIEDLSIIRTQTGKSK 103
Query: 191 GFGFVCFSSPEEATKAV 241
GFG+V + + E A +A+
Sbjct: 104 GFGYVTYENAESAQRAL 120
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +2
Query: 173 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 289
++ RS+GFGFV F++PE+A AV +NG+ V + L +A
Sbjct: 94 QEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIA 132
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTE 247
+++V N+ +E+L++ F+ G + S +++ E G+ KG+GF + E A A+
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 248 MNGRIVGTKPLYVALAQRKEDRK 316
+NG + + L V A +++++
Sbjct: 86 LNGYELNGRALRVDSAASEKNKE 108
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 182 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 310
+SKGFGFV F E+A KA+ EM+ +G K + A RK +
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNN 594
Score = 29.1 bits (62), Expect = 3.1
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 38 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG-FGFVCFS 214
L++ + +LYV NLD E + F + K M+ KG + FV F
Sbjct: 358 LRARYFPEEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCK-MINSPTDKGPYCFVEFE 416
Query: 215 SPEEATKAVTEMNGRIVGTKPLYV 286
+ +A +A M+ R V K L V
Sbjct: 417 THADAQEAKFRMDQRTVMDKKLKV 440
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITS 157
+++V +L + +D+ LRK F PFG I++
Sbjct: 459 HIFVGDLAENVDNALLRKTFEPFGEISA 486
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 39.5 bits (88), Expect = 0.002
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +2
Query: 50 RLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFS 214
++T+ +GV+ L V L + +++ F FG I +V L+ RS+GFGFV F
Sbjct: 105 KITKVEGVDVGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFK 164
Query: 215 SPEEATKAVTEMNGRIVGTKPLYVALAQRKED 310
E+A K V + RI G + V L + KE+
Sbjct: 165 KDEDA-KNVLSTSHRIQG-RLCEVRLPRPKEE 194
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
++++ NL I++E LR+ F G + S +++ + G KGFG+V F S + A+
Sbjct: 57 SVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFALKM 116
Query: 248 MNGRIVGTK 274
N G K
Sbjct: 117 NNAEFKGRK 125
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK-----------------GFGFV 205
L+V N+ D LR+ F FG I +++ + SK GFGFV
Sbjct: 70 LHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERGSKHAVRFPTRPNPLNLRIEGFGFV 129
Query: 206 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 304
F++ EA KA ++NG IV + + V+L +
Sbjct: 130 TFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 38.7 bits (86), Expect = 0.004
Identities = 29/87 (33%), Positives = 48/87 (55%)
Frame = +2
Query: 44 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPE 223
+++L G ++V + T +E L++EF G + +V E RS+GF V F + E
Sbjct: 101 AKKLIASGGKTVFVSGIGLT--EEILKEEFNHLGHVE--RVNFEKNRSQGF--VTFDTWE 154
Query: 224 EATKAVTEMNGRIVGTKPLYVALAQRK 304
A KA+ EMNG V + V++A+R+
Sbjct: 155 AADKAIDEMNGLKVQHVHIRVSMARRQ 181
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 38.3 bits (85), Expect = 0.005
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKE-FAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
L+V L + L KE F+ G +T A+V + +G S+GF FV +++ EEA K
Sbjct: 207 LFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAEEAEKGQRA 266
Query: 248 MNGRIVGTKPLYVA 289
NGR V + VA
Sbjct: 267 HNGRQVEGSNIRVA 280
Score = 32.3 bits (70), Expect = 0.33
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
L+V NL + + +P+G I ++ + G SKG+GFV +++ E A +A ++
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQL 174
Query: 251 ---NGRIVGTKPLYVALAQ 298
+ +G + L VA A+
Sbjct: 175 LNTASKYIGGRILRVAFAE 193
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 36.7 bits (81), Expect = 0.015
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPS-TQAASAYANMQPTYRP-APRAPAQS 589
PS PP P Y P Q P P PP +PS S+Y QP+Y P AP A +
Sbjct: 514 PSYPPTPSSYLPTQ-----PYYPPPQPYPPTQPSYPPTPSSYPPTQPSYPPTAPFLSADT 568
Query: 590 TIRTS 604
T+ +S
Sbjct: 569 TLLSS 573
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
PS PP +Y P Q P TP ++ PP +PS Y P+Y P P
Sbjct: 170 PSYPPTQPFYPPTQ--PFYPPTP--SSYPPTQPS------YPPTAPSYPPTP 211
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 36.7 bits (81), Expect = 0.015
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+Y+ N+ D + +EF FG + V GF F F +A AV E++G
Sbjct: 4 VYIGNIGDNASKREIEREFETFGPLRDVWVARNP---PGFAFCVFEDRRDAEDAVRELDG 60
Query: 257 RIVGTKPLYVALAQ 298
R + + V LA+
Sbjct: 61 RYICGQRARVELAK 74
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 36.7 bits (81), Expect = 0.015
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
LYV +L ++ + +++ F+ +G + + + + + S+GF +V + PEE KA+ M
Sbjct: 1159 LYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHM 1218
Query: 251 NG 256
+G
Sbjct: 1219 DG 1220
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/80 (26%), Positives = 41/80 (51%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
++YV+N+ + + +L+ F +G I + + + +GFV F+ E A +A+ +N
Sbjct: 3 SIYVRNVPLPMSETQLKAVFTKYGQIEKVR------KIRDYGFVYFAKRESAVQAIDGIN 56
Query: 254 GRIVGTKPLYVALAQRKEDR 313
G + L V+LA + R
Sbjct: 57 GAYIDGCKLEVSLAIPQSSR 76
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 35.9 bits (79), Expect = 0.027
Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY---ANMQPTYRPAPRAPAQ 586
PS PA Y A + AQ PV P+ A+AY A + PT PA PAQ
Sbjct: 1305 PSAAPATAYPTQAPANPTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPTAAPATAYPAQ 1364
Query: 587 S 589
S
Sbjct: 1365 S 1365
Score = 34.7 bits (76), Expect = 0.062
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY---ANMQPTYRPAPRAPAQ 586
P+ PA Y A + + AQ PV P+ A+AY + PT PA PAQ
Sbjct: 1321 PTAAPATAYPAQAPVNPTAAPATAYPAQAPVNPTAAPATAYPAQSPFNPTAAPATAYPAQ 1380
Query: 587 STIRTSLG 610
+ + G
Sbjct: 1381 APANPTAG 1388
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAY---ANMQPTYRPAPRAPAQ 586
PS PAP A + T + Q P P+ A+AY A + PT PA PAQ
Sbjct: 1291 PSAAPAPAPAAQAYPSAAPATA--YPTQAPANPTAAPATAYPAQAPVNPTAAPATAYPAQ 1348
Query: 587 STIRTSLGARPIT 625
+ + + A P T
Sbjct: 1349 APVNPT--AAPAT 1359
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 35.9 bits (79), Expect = 0.027
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 1/102 (0%)
Frame = +2
Query: 8 QKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GR 184
+K LKR + L+ + ++ N N ++ ++ G + + E +
Sbjct: 221 EKALKRNKDYLQGRYIELFKDTNRDFDNNKQGDGEKSWMRKLQEKGDDEEEEPIGEHTNK 280
Query: 185 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 310
+ G GFV F PE A KA E++G + + L++ A+ K++
Sbjct: 281 TIGIGFVTFLMPEHAVKAFNELDGTVFQGRLLHILPAKAKKE 322
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 166
+GV L+VKNL +E L+++FA G + SA +
Sbjct: 532 EGVTLFVKNLSFESTEEALKQKFAAVGPVKSATI 565
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 110 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 241
D+ + + F+P + VM + G+ G FV FSS + KA+
Sbjct: 181 DKHILEFFSPLKPVAIRFVMNKKGQPSGCAFVDFSSKSDLEKAL 224
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 35.9 bits (79), Expect = 0.027
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
L+V + D+ LRK FA FG I A V+ + +SKG+GFV ++ + A A
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNK 71
Query: 251 NGRIVG 268
I G
Sbjct: 72 RPMIEG 77
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 35.9 bits (79), Expect = 0.027
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +2
Query: 53 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEAT 232
L R + +Y+ +L D + EF +G + V GF F F +A
Sbjct: 26 LRRAEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARNP---PGFAFCIFDDRRDAE 82
Query: 233 KAVTEMNGRIVGTKPLYVALAQ 298
AV E++GR + + + V LA+
Sbjct: 83 DAVRELDGRYICGQRVRVELAK 104
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 253
L+V NL+ I + LR F FG + + G+ + FV F+ + A KA M
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCAMQ 298
Query: 254 GRIVGTKPLYVALAQRKE 307
G+ +G + + + ++
Sbjct: 299 GQCIGRNHIKIGYGRSQQ 316
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 35.5 bits (78), Expect = 0.036
Identities = 20/76 (26%), Positives = 39/76 (51%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
++V NLD I E L F+ G I ++ +DG+ + ++ F+ + A+ + +G
Sbjct: 74 VFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQAIVSAL-QYSG 132
Query: 257 RIVGTKPLYVALAQRK 304
I G KP+ ++R+
Sbjct: 133 AIFGGKPIKSRSSRRR 148
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Frame = +2
Query: 32 EQLKSERLT-RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGF 202
+QLK + + +++ + V NL + + L++ F P G I+ + + +SKGF F
Sbjct: 167 QQLKEDDGSGQHETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAF 226
Query: 203 VCFSSPEEATKAVTEMNG 256
+ F E+A +A+ ++G
Sbjct: 227 INFVHREDAARAIEVLSG 244
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/61 (34%), Positives = 26/61 (42%)
Frame = +2
Query: 389 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 568
P F+PS PP P + PA PT P + PP P+ A N P+ PA
Sbjct: 297 PPAPPNLFIPSAPPNP-HIPPAPPNPYIPTAPPNPSIPPAPPNPSIPPAPPN--PSIPPA 353
Query: 569 P 571
P
Sbjct: 354 P 354
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 33.9 bits (74), Expect = 0.11
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +2
Query: 167 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 280
++++GR KG FV S E+A +A+ E++G ++ KP+
Sbjct: 285 LMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 33.1 bits (72), Expect = 0.19
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
Y+ NL ++D++ L ++F + + E GR +GFGFV + + K + +
Sbjct: 85 YIGNLSYSVDEQALEEKFHDCNVVDVRVITDRETGRPRGFGFVTLEAKKTRIKPLKNLTD 144
Query: 257 R 259
R
Sbjct: 145 R 145
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 253
L+V NL + + + F+ G + +++ G+ KG+G+V + A+ AV ++
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLTLD 232
Query: 254 GRIVGTKPLYVALA 295
V + + VAL+
Sbjct: 233 KTEVKGRTISVALS 246
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 238
+G L+V N+ + ++ + + F+ +G I + V L+ G KG+ V + + +EA A
Sbjct: 291 EGWILFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSA 350
Query: 239 VTEMNG 256
+ +NG
Sbjct: 351 LEALNG 356
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPA 583
P LP +P PA + P P+ + PP+R + ++S A T PR PA
Sbjct: 481 PELPGSPGDSPPATSPKQPPLPPKHSNGPPLRQTPMSSSLSATPVSTPDTTPRTPA 536
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 32.7 bits (71), Expect = 0.25
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Frame = +2
Query: 113 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEA----TKAVTEMNGR--IVG 268
E LR+ F FG + VM + RS+GFGF+ F P+ E++G+ +
Sbjct: 122 EGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKMVTT 181
Query: 269 TKPLYV 286
TK +++
Sbjct: 182 TKKIFI 187
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 32.3 bits (70), Expect = 0.33
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+YV NL + ++ L F +G I + G F FV F P +A AV +G
Sbjct: 263 VYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDG 322
>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
Length = 242
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
P+ P P ++GP + RPT P + P+ P +A P P PR+P
Sbjct: 33 PTTPSPPSHHGPISLRPHRPTIP--SPHDPITPRPHRPTAPRPHDP-IAPRPRSP 84
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 31.9 bits (69), Expect = 0.44
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 98 DTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGR 259
D +DE L F G I ++M++ G +KGF F FS+ +EA AV +++ +
Sbjct: 162 DCFEDE-LIPVFEECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNK 216
>SB_53239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 31.9 bits (69), Expect = 0.44
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +2
Query: 104 IDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEATKAVTEMNGR 259
+++E L + F +G + S K+M E R++ GFV + ++ KA+ + G+
Sbjct: 217 MNEEMLMRLFGKYGPLASVKIMWPRTEEEKSRNRNCGFVAYMRRKDGDKAIKHLTGK 273
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+Y+ L ++ ++K F +G +++L+DG +GFV F ++A AV E NG
Sbjct: 5 VYLGRLPYGTREDDVKKFFYTYGRFKIREIILKDG----YGFVEFDYSDDAEDAVYECNG 60
Query: 257 R 259
+
Sbjct: 61 K 61
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 253
+++ L + + + L + F FG + ++ E G+S+ GFV F S + A A MN
Sbjct: 526 VWIGGLSEDVTENVLLELFNKFGPVKDVVILRDESGKSRQSGFVHFWSSDVAEAANVGMN 585
Query: 254 G 256
G
Sbjct: 586 G 586
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +2
Query: 182 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKE 307
R +GFGFV F S A KA + ++ K + V AQ KE
Sbjct: 10 RHRGFGFVTFESENSADKA-CDTQYHLINNKKVEVKKAQPKE 50
>SB_24046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2848
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/76 (31%), Positives = 27/76 (35%)
Frame = +2
Query: 392 SGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
S S F PPA R + Q PTT R A ST SA P+
Sbjct: 974 SSVSVDFKSKEPPASRIPVLSSKPQASPTTDRRAASSSSNHSTPVNSAPPTPTKNATPSK 1033
Query: 572 RAPAQSTIRTSLGARP 619
P QST T + P
Sbjct: 1034 GTPGQSTSGTPVNGTP 1049
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 194 FGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKED 310
FGFV F + + A +AV + +GRI+ K + V + + D
Sbjct: 82 FGFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRAD 120
>SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)
Length = 415
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 476 TTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 604
TT +++PP P T A +++N Q + AP APAQ R+S
Sbjct: 151 TTTSQDSRPPSYPETGARVSHSNEQ-VWPLAPTAPAQQDPRSS 192
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 410 FVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQS 589
F P P + P Q +Q +P P Q P RP Q + ++QP +P RA Q+
Sbjct: 480 FQPGQSPQQPFL-PDQQSQ-KPFRPEQQPQQPFRPGQQPQQPFRSVQPPQQPF-RADQQT 536
Query: 590 TIRTSLGARP 619
G +P
Sbjct: 537 QQPFQSGQQP 546
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 443 YGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 565
+ P Q Q +P+ P Q P RP Q + ++QP +P
Sbjct: 580 FRPGQQPQ-QPSRPGQQHQQPFRPEQQPQQPFRSVQPPQQP 619
>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 865
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 431 APRYYGPAQMTQIRPTTPRWN-AQPPVRPSTQAASAYANMQPTYRP 565
+PR Y P +T +PR + PP RP T SA +P +P
Sbjct: 613 SPRLYTPKSITPKFILSPRQTLSAPPSRPKTAPTSAQRTPEPIRKP 658
>SB_59647| Best HMM Match : Ank (HMM E-Value=0.00054)
Length = 305
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 288 ATYNGLVPTIRPFISVTALVASSGEEKQTNPKPLLRPSSSITFADVIVPNGAN 130
A YNG +P ++ I + S +EK + P + + +V NGAN
Sbjct: 30 AAYNGDLPQLKMLIETGVVSISERDEKGSTPAHKAAGNGHVQVLQWLVENGAN 82
>SB_59684| Best HMM Match : C1_3 (HMM E-Value=8.3)
Length = 138
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 619 GSCT*RCSYCRLGRSSRCWSVSGLHICICRCCLCARPYRGLCIPPWSCRSYLSHLS 452
G C RC CR+ R C + + C+ RC C C+ + C HLS
Sbjct: 53 GCCVMRCVACRVMRCVACCVMRCVACCVMRCVDC-------CVVTFCCYPSGRHLS 101
>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
Length = 218
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 619 GSCT*RCSYCRLGRSSRCWSVSGLHICICRCCLCARPYRGLCIPPWSCRSYLSHLS 452
G C RC CR+ R C + + C+ RC C C+ + C HLS
Sbjct: 133 GCCVMRCVACRVMRCVACCVMRCVACCVMRCVDC-------CVVTFCCYPSGRHLS 181
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 389 PSGASGFFVPSLP---PAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTY 559
P+ AS + PS P P+ PA + PT+P ++ P + A+ +Y+ P+Y
Sbjct: 405 PAAASPGYSPSSPAFMPSSPSMSPASPSY-SPTSPGYSPSSPSSGYSPASPSYSPTSPSY 463
Query: 560 RP 565
P
Sbjct: 464 SP 465
>SB_1793| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 864
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 481 SCRSYLSHLSWSIVTWCWRERWYKKSTCTTRLEY 380
S + L ++SI W W R+Y ST T R+ Y
Sbjct: 787 SAATSLDTKTFSIEYWRWHHRFYSGSTATIRIFY 820
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
+++ L + ++++++++ + FG + + ++ + G SKG+ F + A+ +
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQGL 734
Query: 251 NGRIVGTKPLYVALA 295
NG +G K L V A
Sbjct: 735 NGMQLGDKKLIVQRA 749
>SB_28410| Best HMM Match : zf-CCCH (HMM E-Value=7.9e-05)
Length = 905
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 389 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPV 508
P+G +P +PP P Y P P P+++ +PPV
Sbjct: 376 PTGVPPQMLPMMPPRPTVYHPPADDTYNPEQPQFD-RPPV 414
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 95 DDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNG 256
D+ +D+ L++ +A +++ G ++GFGFV F +PE A + + + G
Sbjct: 340 DEISEDDVLQELYAAEVAFRDVRIVRNKIGYTRGFGFVEFDTPEAAKEWMDYLKG 394
>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1933
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 553 GLHICICRCCLCARPYRGLCIPPWSCRSYLSHLSW 449
GL +C L A P W R+Y SH+SW
Sbjct: 1366 GLQLCAFEIGLFALGLHNRTSPNWLSRTYSSHVSW 1400
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -3
Query: 571 RCWSVSGLHICICRCCLCAR--PYRGLCIPPWSCRSYLSHLSWSIVTWCWRERWYKKSTC 398
RC SV C C C CA + LC P WS L S++ CW++ + S
Sbjct: 231 RC-SVCTCCPCDCTCLQCAPCIVFSALCCPFWSL-----CLLCSMINSCWKQPFQSTSAL 284
Query: 397 TTRL 386
R+
Sbjct: 285 VLRM 288
>SB_24012| Best HMM Match : RRM_1 (HMM E-Value=0.69)
Length = 166
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 170 LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 274
L+ GRSK +GFV F E KA+ I G K
Sbjct: 97 LKSGRSKKYGFVFFKDEEACEKAMGNQPHFIEGQK 131
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 452 AQMTQIRPT-TPRWNAQPPVRPSTQAA-SAYANMQPTYRPAPRAPAQSTIRTSLGARP 619
A TQ P+ TP P V PSTQAA SA ++ Q AP ++ S A P
Sbjct: 1917 ASSTQAAPSVTPSTLMTPSVTPSTQAAPSAASSTQVAPSMAPSTQTGHSVTPSTQAGP 1974
>SB_13859| Best HMM Match : Exonuc_VII_S (HMM E-Value=5.7)
Length = 198
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDE 115
E ++ELK K E+LK E+L Q V + + DD DD+
Sbjct: 35 EEKEELKSKCEKLKEEKLKMEQVVWWWDEYGDDDDDDD 72
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 140 FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 286
+G I + ++ + G+ KGF F+C+ AV NG +G + + V
Sbjct: 2 YGEIVNVNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRV 52
>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
Length = 482
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQS 589
PP+P++Y P Q P A P V A + N PT +P A S
Sbjct: 15 PPSPKHYTPTQPINQVPPPALTTAIPTVAAYQAAHPSAINASPTTVGSPSTTAPS 69
>SB_54606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = -3
Query: 541 CICRC---CLCARPYRGLCIPPW 482
C+CRC CLCA Y + +PP+
Sbjct: 16 CLCRCLCRCLCADVYVPMSMPPY 38
>SB_28937| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-08)
Length = 1258
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 422 LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPA 583
LP P P T I P++ + N+ PP PSTQ S + T P+ + P+
Sbjct: 248 LPSTP---APINPTPINPSSYQPNSHPPQLPSTQLPS--TQLPSTQLPSTQLPS 296
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 173 EDGRSKGFGFVCFSSPEEATKAVTEMNGRI 262
E+G++ G GFV F+SPE A +A+ + +I
Sbjct: 74 EEGKTTGEGFVEFASPEIAGQAMQKHKEKI 103
>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = -3
Query: 571 RCWSVSGLHICICRCCLCAR--PYRGLCIPPWSCRSYLSHLSWSIVTWCWRERWYKKSTC 398
RC SV C C C CA + LC P WS L S++ CW++ + S
Sbjct: 231 RC-SVCTCCPCDCPCLQCAPCIVFSALCCPFWSL-----CLLCSMINSCWKQPFQSTSAL 284
Query: 397 TTRL 386
R+
Sbjct: 285 VLRM 288
>SB_20133| Best HMM Match : Extensin_2 (HMM E-Value=2.1)
Length = 762
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 243 VTALVASSGEEKQTNPKPLLRPSSSITFADVI 148
++ + +S KQT PK L+RP S D I
Sbjct: 651 ISGIPSSRSSRKQTEPKKLVRPESEYELEDEI 682
>SB_45079| Best HMM Match : RRM_1 (HMM E-Value=0.0027)
Length = 253
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 200 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 316
+V F E+A KAV ++N R +P+Y L+ + R+
Sbjct: 116 YVKFRYEEDAEKAVNDLNNRWYNGQPIYAELSPVTDFRR 154
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +2
Query: 446 GPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 556
G TQ+R TT QPP PS QA A PT
Sbjct: 1151 GNEHSTQVRNTTQAKPPQPPPVPSVQAPPAPPPAPPT 1187
>SB_14241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 419 SLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPST--QAASAYANMQPTYRPAPRAP 580
SL APRYYG +T +PR+ QP + ++ QA Y + T P R P
Sbjct: 41 SLLQAPRYYGQPVITDTSLLRSPRYYGQPAITDTSLLQAPRYYEHPVITDSPLLRTP 97
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 188 KGFGFVCFSSPEEATKAVTEMNGR-IVGTK 274
+G+GFV F +A AV ++NGR ++G +
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGER 751
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 412 CTIAPSSTTLLWTSSNDSNKTYNSKVE 492
CT+ ST L W++ D + YN +E
Sbjct: 836 CTVKECSTDLSWSTMTDMERVYNEFLE 862
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 547 HICICRCCLCARPYRGLCIPPWSCRS 470
++ CR R RGLC+PPW R+
Sbjct: 465 YVLSCRV-RTGRSIRGLCLPPWCSRA 489
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +2
Query: 476 TTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARP 619
T+ A+PP RP A A + PT R P R G+ P
Sbjct: 584 TSTEGPARPPARPPPTAKPAVNRLSPTRRSLPPVATHQEDRYRPGSTP 631
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +2
Query: 56 TRYQGVNLYVKNLD-DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEE 226
T G +++ + D ++DE L G I ++ ++ G +KGF F F+
Sbjct: 148 TEESGTEVFIGKIPRDCLEDE-LIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTS 206
Query: 227 ATKAVTEMNGR 259
A +A+T +N +
Sbjct: 207 AYQAITTLNDK 217
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
PP+P Y P+ + P+ PR+ PP PS+ Y Y P+P
Sbjct: 335 PPSPPRY-PSSHPRYPPSPPRYPPSPPRYPSSH--PRYPPSPLRYLPSP 380
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP-----STQAASAYANMQPTY--RPAP 571
P P P+Y+ PAQ Q + P R + PP RP Q A A P+Y A
Sbjct: 538 PPAPGQPQYH-PAQQIQYQNPGNYRVHRGPPQRPPPLPSQPQLAEKPALQSPSYPQESAS 596
Query: 572 RAPAQSTIRTSLGARP 619
R P +S G P
Sbjct: 597 RLPTPHYSHSSHGQEP 612
>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
Length = 765
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 473 PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 592
PT P + QPPV P T ++P +R +PR T
Sbjct: 460 PTDPNASLQPPVSPGT------VTVKPRHRSSPRCVTNKT 493
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/51 (27%), Positives = 18/51 (35%)
Frame = +2
Query: 428 PAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
P P P + T P +PP+ P S +P PAP P
Sbjct: 629 PFPNITPPEVRPSLPGTPPETKTKPPLAPYPPKTSPKTTPKPHIPPAPSRP 679
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 27.5 bits (58), Expect = 9.4
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +2
Query: 419 SLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 595
++PP P +GP + +R P TP PP PST + P RP P T
Sbjct: 33 AVPPIP--HGPRPLPPLREPPTPA-PTPPPALPSTPTLP----LAPRPRPTASQPTTRTQ 85
Query: 596 RTSLGARP 619
+ GA P
Sbjct: 86 YSGGGAIP 93
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/64 (29%), Positives = 22/64 (34%)
Frame = +2
Query: 389 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 568
P G +P PPA GP + + P P PP P MQP P
Sbjct: 1226 PMGHHMMNMPPPPPAMPPDGPPKFMGLPPPPPGMRPMPPQPPFMPPP---PRMQPPGPPG 1282
Query: 569 PRAP 580
P P
Sbjct: 1283 PPGP 1286
>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1029
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 232 GSFFRRRKTDKPEAFTTSIF*HYLRRRNSP 143
G F +RRKT KP + +F + ++ N P
Sbjct: 969 GRFLKRRKTQKPGMSPSKLFGCFFKKLNCP 998
>SB_27853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 398 ASGFFVPSLPPAPRYYGPAQMTQIRPTT--PRWNAQPPVRPSTQA 526
A FVP LPP+P + RP T P + PP PS A
Sbjct: 195 APNHFVPLLPPSPEPVPTPKAPASRPGTKRPASPSTPPKMPSKTA 239
>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1120
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 386 QPSGASGFFVPSL-PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 562
+P +G P+ P AP G A+ T+ RP P A+P RP A +PT R
Sbjct: 971 RPQDPNGQAEPTKRPQAP--VGEAEPTK-RPQVPVREAEPTKRPQVPVGGA----EPTKR 1023
Query: 563 PA-PRAPAQSTIR 598
P P A+ T R
Sbjct: 1024 PQDPNGQAEPTKR 1036
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +2
Query: 398 ASGFFVPSLPPAPRYYGPAQMTQIRPTT--PRWNAQPPVRPSTQA 526
A FVP LPP+P + RP T P + PP PS A
Sbjct: 19 APNHFVPLLPPSPEPVPTPKAPASRPGTKRPASPSTPPKMPSKTA 63
>SB_58648| Best HMM Match : Helicase_C (HMM E-Value=2.2e-14)
Length = 679
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +2
Query: 497 QPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSLGARPIT 625
QPP P T A PT P + T+ ++PIT
Sbjct: 294 QPPTEPRTSTPGTPAKSTPTQSGPPLRRSTRTVNKKPSSQPIT 336
>SB_43344| Best HMM Match : Pkinase (HMM E-Value=6.9e-08)
Length = 424
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 243 VTALVASSGEEKQTNPKPLLRPSSSIT 163
+TA + G K+T +P+ RP SIT
Sbjct: 388 ITASIPKLGSHKETRTRPVQRPIQSIT 414
>SB_41641| Best HMM Match : PT (HMM E-Value=3.1)
Length = 873
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +2
Query: 386 QPSGASGFFVPSL-PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 562
+P +G P+ P AP G A+ T+ RP P A+P RP A +PT R
Sbjct: 495 RPQDPNGQAEPTKRPQAP--VGEAEPTK-RPQVPVREAEPTKRPQVPVGGA----EPTKR 547
Query: 563 PA-PRAPAQSTIR 598
P P A+ T R
Sbjct: 548 PQDPNGQAEPTKR 560
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,535,857
Number of Sequences: 59808
Number of extensions: 439580
Number of successful extensions: 1628
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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