Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0459
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 151 5e-37
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 150 6e-37
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 141 3e-34
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 136 1e-32
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 130 6e-31
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 118 2e-27
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 111 4e-25
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 97 6e-21
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 62 3e-10
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 61 7e-10
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 60 1e-09
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 60 1e-09
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 58 4e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 58 5e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 58 5e-09
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 58 6e-09
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 58 6e-09
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 58 6e-09
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 58 6e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 57 1e-08
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 57 1e-08
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 57 1e-08
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 56 1e-08
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 56 1e-08
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 56 1e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 56 2e-08
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 56 3e-08
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 55 3e-08
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 55 3e-08
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 55 4e-08
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 55 4e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 54 6e-08
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 54 8e-08
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 54 1e-07
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 53 1e-07
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 53 1e-07
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 53 2e-07
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 53 2e-07
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 52 2e-07
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 52 3e-07
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 52 3e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 52 4e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 52 4e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 51 5e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 51 5e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 51 5e-07
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 51 7e-07
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 51 7e-07
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 51 7e-07
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 1e-06
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 50 1e-06
At5g51300.2 68418.m06360 splicing factor-related contains simila... 50 1e-06
At5g51300.1 68418.m06359 splicing factor-related contains simila... 50 1e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 50 1e-06
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 50 2e-06
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 50 2e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 49 2e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 49 3e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 49 3e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 48 4e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 48 4e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 48 5e-06
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 48 5e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 7e-06
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 48 7e-06
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 47 9e-06
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 47 9e-06
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 47 9e-06
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 47 1e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 47 1e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 47 1e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 46 3e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 45 4e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 45 4e-05
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 45 4e-05
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 44 8e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 44 8e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 44 8e-05
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 44 8e-05
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 44 8e-05
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 44 1e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 44 1e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 44 1e-04
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 44 1e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 43 1e-04
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 43 1e-04
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 43 1e-04
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 43 1e-04
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 43 2e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 43 2e-04
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 42 3e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 42 3e-04
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 41 6e-04
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 41 6e-04
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 8e-04
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 40 0.001
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 40 0.001
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 40 0.001
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 0.001
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 40 0.001
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 40 0.001
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 40 0.001
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 40 0.001
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 40 0.001
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 40 0.001
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 40 0.001
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 40 0.002
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 40 0.002
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 40 0.002
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 40 0.002
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 40 0.002
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 39 0.002
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 39 0.002
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 39 0.002
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 39 0.003
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 38 0.004
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 38 0.004
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 38 0.004
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.005
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.005
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 38 0.007
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 37 0.010
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 37 0.010
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 37 0.010
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.010
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 37 0.013
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 37 0.013
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 37 0.013
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 36 0.017
At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family... 36 0.029
At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family... 36 0.029
At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family... 36 0.029
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 35 0.038
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 35 0.038
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 35 0.038
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c... 35 0.038
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 35 0.051
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 34 0.067
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 34 0.067
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 34 0.067
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 34 0.067
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 34 0.067
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 34 0.089
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 34 0.089
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 34 0.089
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 34 0.089
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 34 0.089
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 33 0.12
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 33 0.12
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 33 0.12
At3g10070.1 68416.m01207 transcription initiation factor IID (TF... 33 0.12
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 33 0.12
At4g10610.1 68417.m01735 RNA-binding protein, putative 33 0.16
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.16
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 33 0.16
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.16
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.21
At5g24440.1 68418.m02880 RNA-binding protein, putative 33 0.21
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.21
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.21
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c... 33 0.21
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 33 0.21
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 32 0.27
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 32 0.27
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 32 0.27
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 32 0.27
At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical t... 32 0.36
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 32 0.36
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 32 0.36
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 31 0.47
At3g08670.1 68416.m01007 expressed protein 31 0.47
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.47
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.63
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 31 0.63
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 31 0.63
At1g23540.1 68414.m02960 protein kinase family protein contains ... 31 0.63
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 31 0.83
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 31 0.83
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 31 0.83
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 30 1.1
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 30 1.1
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 30 1.1
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 30 1.1
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 30 1.4
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 1.4
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 30 1.4
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 30 1.4
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 1.4
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 30 1.4
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 29 1.9
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 1.9
At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) / cyclin-d... 29 1.9
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 1.9
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 29 2.5
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 29 2.5
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 29 2.5
At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid t... 29 2.5
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 29 2.5
At3g07100.1 68416.m00845 protein transport protein Sec24, putati... 29 2.5
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 29 2.5
At4g34150.1 68417.m04846 C2 domain-containing protein similar to... 29 3.3
At1g10620.1 68414.m01204 protein kinase family protein contains ... 29 3.3
At5g66840.1 68418.m08427 SAP domain-containing protein contains ... 28 4.4
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 28 4.4
At5g07820.1 68418.m00896 expressed protein 28 4.4
At4g35870.1 68417.m05094 expressed protein 28 4.4
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 28 4.4
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 28 4.4
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 28 4.4
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 28 4.4
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 28 5.8
At5g06640.1 68418.m00750 proline-rich extensin-like family prote... 28 5.8
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 28 5.8
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 28 5.8
At3g25240.1 68416.m03153 hypothetical protein contains Pfam prof... 28 5.8
At2g31090.1 68415.m03797 expressed protein 28 5.8
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa... 28 5.8
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 28 5.8
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 5.8
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 27 7.7
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 27 7.7
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 27 7.7
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 27 7.7
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 27 7.7
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 27 7.7
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 27 7.7
At4g08400.1 68417.m01388 proline-rich extensin-like family prote... 27 7.7
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 7.7
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 7.7
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 151 bits (365), Expect = 5e-37
Identities = 66/109 (60%), Positives = 92/109 (84%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-D 178
ER++EL+RKFEQ + R + QG NLY+KNLDD++DDE+L++ F+ +G +TS+KVML
Sbjct: 309 EREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ 368
Query: 179 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
G S+GFGFV +S+PEEA +A++EMNG+++G KPLY+ALAQRKEDR+AHL
Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL 417
Score = 79.4 bits (187), Expect = 2e-15
Identities = 44/102 (43%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Frame = +2
Query: 23 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFG 199
R+ E+ + E + N+YVKNL I ++ LRK F FG I+SA VM + G S+ FG
Sbjct: 213 RRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFG 272
Query: 200 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
FV F E A AV +MNG +G LYV AQ+K +R+ L
Sbjct: 273 FVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEEL 314
Score = 74.1 bits (174), Expect = 7e-14
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +2
Query: 56 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEA 229
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 130 TRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESA 189
Query: 230 TKAVTEMNGRIVGTKPLYVALAQRKEDR 313
A+ ++NG ++ K ++V R+++R
Sbjct: 190 QAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 150 bits (364), Expect = 6e-37
Identities = 72/109 (66%), Positives = 89/109 (81%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-D 178
ER+ ELK+KFEQ E + QG NLYVKNLD+++ D++LR+ FAPFGTITS KVM +
Sbjct: 304 ERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS 363
Query: 179 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
G S+G GFV FS+PEEAT+A+TEMNG+++ TKPLYVALAQRKEDRKA L
Sbjct: 364 GVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARL 412
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 250
N+YVKNL +++ DE L K F FG TS +M + +G+SKGFGFV F + ++A +AV +
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 251 NGRIVGTKPLYVALAQRKEDRKAHL 325
NG+ K +V AQ+K +R+ L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETEL 309
Score = 67.7 bits (158), Expect = 6e-12
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Frame = +2
Query: 59 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEAT 232
R GV N+++KNLD +ID + L + F+ FG I S KV ++ G+SKG+GFV + + E A
Sbjct: 128 RKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQ 187
Query: 233 KAVTEMNGRIVGTKPLYV 286
A+ ++NG ++ K +YV
Sbjct: 188 GAIDKLNGMLLNDKQVYV 205
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/78 (30%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTE 247
+LYV +LD T+ D +L + F G + S +V + RS G+G+V +++P++A++A+ E
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 248 MNGRIVGTKPLYVALAQR 301
+N + + + V + R
Sbjct: 106 LNFMALNGRAIRVMYSVR 123
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 141 bits (342), Expect = 3e-34
Identities = 63/109 (57%), Positives = 89/109 (81%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED- 178
+R++EL+RKFEQ + R + QG NLY+KNLDD+++DE+L++ F+ +G +TS KVM+
Sbjct: 305 DREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ 364
Query: 179 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
G S+GFGFV +S+PEEA A+ EMNG+++G KPLYVALAQRKE+R+AHL
Sbjct: 365 GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHL 413
Score = 82.6 bits (195), Expect = 2e-16
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +2
Query: 23 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFG 199
R+ ++ +SE N+YVKNL I D+ L+K F +G I+SA VM + G S+ FG
Sbjct: 209 RRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFG 268
Query: 200 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
FV F SPE A AV +MNG +G LYV AQ+K DR+ L
Sbjct: 269 FVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEEL 310
Score = 74.9 bits (176), Expect = 4e-14
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = +2
Query: 56 TRYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEA 229
TR G N+++KNLD +ID++ L + F+ FGTI S KV ++ GRSKG+GFV F E A
Sbjct: 126 TRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 230 TKAVTEMNGRIVGTKPLYVALAQRKEDR 313
A+ ++NG ++ K ++V R++DR
Sbjct: 186 QAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 136 bits (329), Expect = 1e-32
Identities = 66/109 (60%), Positives = 85/109 (77%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-D 178
ER+ EL R++EQ S+ ++ G+NLYVKNLDDT+ DE+LR+ FA FGTITS KVM +
Sbjct: 305 ERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS 364
Query: 179 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
G SKG GFV FS+ EA++ + EMNG++VG KPLYVALAQRKE+R+A L
Sbjct: 365 GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKL 413
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 250
N+YVKNL + D+ L+ F +G+I+SA VM + DG+S+ FGFV F +PE+A +AV +
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 251 NGRIVGTKPLYVALAQRKEDRKAHLT 328
NG+ K YV AQ+K +R+ L+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELS 311
Score = 74.5 bits (175), Expect = 5e-14
Identities = 36/89 (40%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Frame = +2
Query: 59 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEAT 232
R GV NL+VKNLD ++D++ L + F+ GTI S KV + G+S+G+GFV F + + A
Sbjct: 129 RRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAK 188
Query: 233 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 319
A+ ++NG+++ K ++V RKE+R++
Sbjct: 189 NAIEKLNGKVLNDKQIFVGPFLRKEERES 217
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 130 bits (315), Expect = 6e-31
Identities = 59/109 (54%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-D 178
ER+ EL+ ++EQ E ++Q NLYVKNLD +I DE+L++ F+PFGT+TS+KVM + +
Sbjct: 109 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 168
Query: 179 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
G SKG GFV F++PEEAT+A+++++G+++ +KPLYVA+AQRKEDR+ L
Sbjct: 169 GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRL 217
Score = 78.2 bits (184), Expect = 4e-15
Identities = 41/102 (40%), Positives = 63/102 (61%), Gaps = 1/102 (0%)
Frame = +2
Query: 23 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFG 199
R+ E+ + T++ N+YVKNL ++ D+ L+ F +G ITSA VM + +G+SKGFG
Sbjct: 15 RRQERDSTANKTKF--TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFG 72
Query: 200 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
FV F + ++A +AV +NG K YV AQ+K +R+ L
Sbjct: 73 FVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 114
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 118 bits (285), Expect = 2e-27
Identities = 61/109 (55%), Positives = 82/109 (75%), Gaps = 2/109 (1%)
Frame = +2
Query: 5 RQKELKRKFEQLKSER-LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-D 178
R ++LK KFE K R + +G+NLYVKNLDD++D+ +L + F+ FGTITS KVM+ +
Sbjct: 200 RTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSN 259
Query: 179 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
G SKG GFV FS+ EEA+KA+ +MNG++VG KP+YV+LAQ KE K HL
Sbjct: 260 GISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHL 308
Score = 76.6 bits (180), Expect = 1e-14
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 250
N+YVKNL +T D L++ F FG ITSA VM + +G+S+ FGFV F E A A+ +M
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 251 NGRIVGTKPLYVALAQRKEDRKAHL 325
NG +V K L+V AQRK +R L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDL 204
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 250
N++VKNLD++ID+++L F+ FG + S KV + G SKG+GFV F S A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 251 NGRIVGTKPLYV 286
NG ++ + ++V
Sbjct: 92 NGTLIRNQHIHV 103
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 111 bits (267), Expect = 4e-25
Identities = 54/109 (49%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED- 178
ER++ L+ +F++ E+ + N+YVKN++ + +E LRK F+ GTITS K+M ++
Sbjct: 281 EREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK 340
Query: 179 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHL 325
G+SKGFGFVCFS+PEEA AV +G++ KPLYVA+AQ+KEDRK L
Sbjct: 341 GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQL 389
Score = 74.5 bits (175), Expect = 5e-14
Identities = 39/99 (39%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Frame = +2
Query: 23 RKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFG 199
+K +++K E +Y NLY+KNLD + ++ LR++FA FG I S + ++ R +G+
Sbjct: 189 KKTDRVKPEE--KY--TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYA 244
Query: 200 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 316
FV F +PE+A +A +NG G+K LYV AQ+K +R+
Sbjct: 245 FVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAERE 283
Score = 69.3 bits (162), Expect = 2e-12
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Frame = +2
Query: 59 RYQGV-NLYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEAT 232
R GV N++VKNL +++ + L+ F FG I S KV LEDG+S+G+GFV F + A
Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAH 166
Query: 233 KAVTEMNGRIVGTKPLYVALAQRKEDR 313
A+ +N IV K +YV +K DR
Sbjct: 167 AAIQTLNSTIVADKEIYVGKFMKKTDR 193
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
+LYV +L ++ + L FA F ++TS ++ + GRS +G+ F S ++A A+ +
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 248 MNGRIVGTKPLYVALAQRKEDRK 316
N ++ K + V + R D +
Sbjct: 85 KNNSLLNGKMIRVMWSVRAPDAR 107
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 97.5 bits (232), Expect = 6e-21
Identities = 53/106 (50%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Frame = +2
Query: 2 ERQKELKRKF-EQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-E 175
ER++ LK+KF + ++ R+ NLYVKNL +++++ RLR+ F +G I SAKVM E
Sbjct: 282 ERREMLKQKFSDNFIAKPNMRWS--NLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE 339
Query: 176 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDR 313
+GRSKGFGFVCFS+ EE+ +A +NG +V KP+ V +A+RKEDR
Sbjct: 340 NGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDR 385
Score = 81.0 bits (191), Expect = 6e-16
Identities = 43/94 (45%), Positives = 58/94 (61%)
Frame = +2
Query: 38 LKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSS 217
L R TR NLYVKNLD +I L + F PFG+I S KV+ E+G+SKGFGFV F +
Sbjct: 101 LAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDT 160
Query: 218 PEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 319
+ A A + ++G +V K L+VA K++R A
Sbjct: 161 EQSAVSARSALHGSMVYGKKLFVAKFINKDERAA 194
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEM 250
N+YVKNL +T+ D+ L F+ +GT++S VM + GRS+GFGFV F +PE A KA+ +
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 251 NGRIVGTKPLYVALAQRKEDRKAHL 325
G +G+K L+V A +K++R+ L
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREML 287
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +2
Query: 59 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 232
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 233 KAVTEMNGRIVGTKPLYVALAQRK 304
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +2
Query: 59 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 232
RY L+V L DD L++ F FG +T A V+ E GRS+GFGFV FS + A
Sbjct: 31 RYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSAN 90
Query: 233 KAVTEMNGRIVGTKPLYVALAQRK 304
A+ EM+G+ + + + V LA +
Sbjct: 91 NAIKEMDGKELNGRQIRVNLATER 114
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
L+V L D+ LR+ F+PFG I A+++ E R KGFGF+ F S ++A KA+ +
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 251 NGRIVGTKPLYVALAQRKEDRKA 319
+G+IV + ++V +A+ E+ +A
Sbjct: 69 DGKIVDGRLIFVEVAKNAEEVRA 91
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 7e-10
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
L+ +L + ++D+ L K FA F T AKV+ + G++KG+GFV F +P + A+ EM
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 251 NGRIVGTKPLYVALAQRKE 307
NG+ VG +P+ + + KE
Sbjct: 199 NGKYVGNRPIKLRKSSWKE 217
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 60.1 bits (139), Expect = 1e-09
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
L+V L +E+L+ FA FG + A+V+ + GRSKGFGFV +++ E+A KA EM
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 251 NGRIVGTKPLYVALAQRKEDRK 316
N + + ++V A+ +E R+
Sbjct: 96 NAKFLDGWVIFVDPARPREPRR 117
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 60.1 bits (139), Expect = 1e-09
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKA 238
G NL++ NLD +D++ L F+ FG I S ++ D G S+GFGF+ + S E + A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 239 VTEMNGRIVGTKPLYVALAQRKEDR 313
+ M G+ + + + V+ A +K+ +
Sbjct: 171 IESMTGQYLSNRQITVSYAYKKDTK 195
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +2
Query: 59 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEAT 232
R Q +YV LD + +E L + F G + + V + + +GF+ + S E+A
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 233 KAVTEMNGRIVGTKPLYVALAQRKEDRKA 319
A+ +N + KP+ V A +D+K+
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKA--SQDKKS 107
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 58.4 bits (135), Expect = 4e-09
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKA 238
+G NL++ N+ D+ L F FG + SAKV ++ G SK FGFV + S A A
Sbjct: 347 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNA 406
Query: 239 VTEMNGRIVGTKPLYVAL 292
+ MNGR +G K L V L
Sbjct: 407 IDMMNGRHLGGKKLKVQL 424
Score = 35.9 bits (79), Expect = 0.022
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 253
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 254 G--RIVG-TKPLYVALAQRKEDR 313
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 59 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 232
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 233 KAVTEMNGR 259
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 59 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEAT 232
R L++ L DD LR FA FG + AKV++ E GRS+GFGFV F+ AT
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 233 KAVTEMNGR 259
A++EM+G+
Sbjct: 91 AAISEMDGK 99
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 57.6 bits (133), Expect = 6e-09
Identities = 25/65 (38%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 247
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 59 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 118
Query: 248 MNGRI 262
MNG++
Sbjct: 119 MNGKV 123
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 57.6 bits (133), Expect = 6e-09
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTE 247
+L+VK D++ + RL+K F+ FG +T+ K++ + +S G+G+V F+S E+A AV
Sbjct: 78 SLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 137
Query: 248 MNGRIVGTKPLYVALAQ 298
MNG+ + + V Q
Sbjct: 138 MNGKFFDGRFILVKFGQ 154
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 57.6 bits (133), Expect = 6e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 248 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 307
Query: 242 TEMNGRIVGTKPLYVALAQRKEDR 313
+NG + + + V+ A+ + R
Sbjct: 308 NSLNGADLDGRQIRVSEAEARPPR 331
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 47 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 220
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 221 EEATKAVTEMNGRIVGTKPLYV 286
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 57.6 bits (133), Expect = 6e-09
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
G LYV NL +DD L F G + A+V+ + GRSKGFGFV SS +E KA+
Sbjct: 256 GNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI 315
Query: 242 TEMNGRIVGTKPLYVALAQRKEDR 313
+NG + + + V+ A+ + R
Sbjct: 316 NSLNGADLDGRQIRVSEAEARPPR 339
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 47 ERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 220
ER + + L+V NL +D +L + F G + +V+ + GRS+GFGFV S+
Sbjct: 91 ERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 221 EEATKAVTEMNGRIVGTKPLYV 286
E A + NG +PL V
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRV 172
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 238
+G ++V L + D L + F+ FG I ++MLE GRS+GFGF+ F+ ++
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 239 VTEMNGRIVGTKPLYVALAQRKEDR 313
+ EM+GR G + + V A+ K R
Sbjct: 65 IREMHGRDFGDRVISVNRAEPKLGR 89
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 338 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 397
Query: 242 TEMNGRIVGTKPLYVAL 292
MNG + K L V L
Sbjct: 398 NTMNGCQLSGKKLKVQL 414
Score = 37.9 bits (84), Expect = 0.005
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 253
L+V L + + ++ F+ +GTI +++ + SKG F+ + S E+A A+ +N
Sbjct: 111 LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALN 170
Query: 254 GRIV---GTKPLYVALAQRKEDRKA 319
GR + PL V A +++R+A
Sbjct: 171 GRHIMEGANVPLIVKWADTEKERQA 195
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
G NL++ N+ +D+ L F PFG + SAKV ++ G SK FGF+ + S A A+
Sbjct: 329 GANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI 388
Query: 242 TEMNGRIVGTKPLYVAL 292
MNG + K L V L
Sbjct: 389 NTMNGCQLSGKKLKVQL 405
Score = 38.7 bits (86), Expect = 0.003
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Frame = +2
Query: 17 LKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKG 193
L+ K+ + ERL V + KN+ +T ++ F+ +GTI +++ + SKG
Sbjct: 86 LQVKYADGELERLEHKLFVGMLPKNVSET----EVQSLFSEYGTIKDLQILRGSLQTSKG 141
Query: 194 FGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDRKA 319
F+ + S E+A A+ +NGR + PL V A +++R+A
Sbjct: 142 CLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQA 186
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
++V +L + D L F +G++ AKV+L+ GRSKG+GFV F+ E +A+TE
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 248 MNGRIVGTKPLYVALAQRK 304
MNG+ T+P+ + A K
Sbjct: 216 MNGQYCSTRPMRIGPAANK 234
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 56.4 bits (130), Expect = 1e-08
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Frame = +2
Query: 59 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEAT 232
RY LY+ L D+ L+ F+ F +T A+VM GRS+G+GFV F S + A
Sbjct: 27 RYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSAN 86
Query: 233 KAVTEMNGR 259
A++ MNG+
Sbjct: 87 SAISAMNGQ 95
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 56.4 bits (130), Expect = 1e-08
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 247
+LY+ NLD + +E L F+ FG + + V+ +D G S+GF F+ F S + A +A+
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRS-VLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 248 MNGRIVGTKPLYVALAQRKED 310
M+GR++G K L V + ED
Sbjct: 77 MDGRLIGQKILCVQRTPKVED 97
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
NL+V L E LR FA FG + AKV+ + G SKGFGFV +++ E++ K +
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 248 MNGRIVGTKPLYVALAQRKEDRKAH 322
M+G+ + ++ A+ +E +++
Sbjct: 117 MDGKFLDGWVIFAEYARPREQSQSY 141
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/71 (36%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 247
N++V +L + D L F+ F + + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 248 MNGRIVGTKPL 280
MNG+ V ++ +
Sbjct: 209 MNGKWVSSRQI 219
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 254 GRIVGTKPLYVALAQ---RKEDRKAH 322
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 244
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 267 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 324
Query: 245 EMNGR 259
N +
Sbjct: 325 MGNAQ 329
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
+YV NL T D+ LR+ F+ +G + A VM + RS+GFGFV +SS EA AV+ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 251 NGRIVGTKPLYVAL 292
+G+ + + + V L
Sbjct: 65 DGKELNGRRVSVKL 78
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 247
N++V +L + D L + F+ F + + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 248 MNGRIVGTKPL 280
MNG+ + ++ +
Sbjct: 205 MNGKWLSSRQI 215
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
++YV N+ + + L++ F G + S+K++ +D S +GFV + A A+ +N
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS--YGFVHYFDRRSAALAILSLN 117
Query: 254 GRIVGTKPLYVALAQ---RKEDRKAH 322
GR + +P+ V A ++ED +H
Sbjct: 118 GRHLFGQPIKVNWAYATGQREDTSSH 143
Score = 30.7 bits (66), Expect = 0.83
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 241
Q +YV NL + L + F G +V ++ R KGFGFV +++ EA A+
Sbjct: 263 QFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ--RDKGFGFVRYNTHPEAALAI 319
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 54.8 bits (126), Expect = 4e-08
Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 4/88 (4%)
Frame = +2
Query: 56 TRYQGV--NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPE 223
T+ +GV L++ L ++ L + F+ G + A+++++ RSKGFGFV F+S +
Sbjct: 27 TQRRGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASAD 86
Query: 224 EATKAVTEMNGRIVGTKPLYVALAQRKE 307
EA KA+ E NG+ + + ++V A+ K+
Sbjct: 87 EAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/84 (32%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
+YV NL +D+ RL + F+ G + A+V+ E GRS+GFGFV S +E +A++ +
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 251 NGRIVGTKPLYVALAQRKEDRKAH 322
+G+ + + + V +A+ + R+ +
Sbjct: 306 DGQNLEGRAIRVNVAEERPPRRGY 329
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
L+V NL ++ + L F GT+ A+V+ E +S+GFGFV SS +EA AV +
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 251 N 253
N
Sbjct: 212 N 212
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 54.4 bits (125), Expect = 6e-08
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
L++ + ++D++ LR+ F +G + +V+L E GRS+GFGFV F+S E A+ A+ +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 251 NGR 259
+GR
Sbjct: 102 DGR 104
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 54.0 bits (124), Expect = 8e-08
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
G +YV NL +DD L F+ G + A+V+ + GRSKGFGFV + S +E A+
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
Query: 242 TEMNGRIVGTKPLYVALAQRKEDRKAH 322
++G + + + V+ A+ + R+ +
Sbjct: 263 KSLDGADLDGRQIRVSEAEARPPRRQY 289
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 71 VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 244
+ L+V NL +D +L + F G + +V+ + GRS+GFGFV SS E A
Sbjct: 91 LKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQ 150
Query: 245 EMNGRIVGTKPLYV 286
+ NG + +PL V
Sbjct: 151 QFNGYELDGRPLRV 164
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 53.6 bits (123), Expect = 1e-07
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +2
Query: 71 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 241
++++V +L + D L + F+ + ++ SAKV+++ GRSKG+GFV F E ++A+
Sbjct: 202 LSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRAL 261
Query: 242 TEMNGRIVGTKPLYVALAQRK 304
TEMNG + + V +A K
Sbjct: 262 TEMNGAYCSNRQMRVGIATPK 282
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/64 (34%), Positives = 37/64 (57%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
++V +D + DE LR+ F+ FG + S K+ + KG GFV F+ + A A+ +NG
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV----GKGCGFVQFADRKSAEDAIESLNG 378
Query: 257 RIVG 268
++G
Sbjct: 379 TVIG 382
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +2
Query: 71 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 242 TEMNG 256
TEMNG
Sbjct: 257 TEMNG 261
Score = 34.3 bits (75), Expect = 0.067
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 244
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 245 EMNG 256
E NG
Sbjct: 163 EFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 53.2 bits (122), Expect = 1e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +2
Query: 71 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 197 LSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 242 TEMNG 256
TEMNG
Sbjct: 257 TEMNG 261
Score = 47.6 bits (108), Expect = 7e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Frame = +2
Query: 53 LTRYQG----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSP 220
LTR +G ++V LD ++ DE L++ F FG I S K+ + KG GFV F +
Sbjct: 294 LTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV----GKGCGFVQFVNR 349
Query: 221 EEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 316
A +A+ ++NG ++G + + ++ + +++
Sbjct: 350 PNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 381
Score = 34.3 bits (75), Expect = 0.067
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGT--ITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 244
++V +L +D+ L FA I S KV+ +G S+G+GFV F S + A K +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 245 EMNG 256
E NG
Sbjct: 163 EFNG 166
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/93 (26%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Frame = +2
Query: 26 KFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFG 199
+F ++K+ + V+NL + ++ L++EF+ FG I K++ ++ RSKG+
Sbjct: 25 RFPKIKASLFNYPLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYA 84
Query: 200 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 298
F+ F+S ++A A+ M+ R+ + +Y+ +A+
Sbjct: 85 FIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAK 117
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
L+V NL T+ E L F G + A+V+ + GRS+G+GFVC+SS E A+ +
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 251 NGRIVGTKPLYVALAQRKE 307
+G + + + V LAQ K+
Sbjct: 239 DGFELEGRAIRVNLAQGKK 257
Score = 32.3 bits (70), Expect = 0.27
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
LY NL +D L + F +V+ + G+S+GF FV S+ E+ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 251 NGRIVGTKPLYVALAQRKEDRKAHL 325
+G + L V A + + K L
Sbjct: 147 DGTEYLGRALKVNFADKPKPNKEPL 171
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Frame = +2
Query: 71 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 241
++++V +L + D L + FA + ++ AKV+++ GRSKG+GFV F E ++A+
Sbjct: 213 LSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAM 272
Query: 242 TEMNGRIVGTKPLYVALAQRK 304
TEMNG ++ + V +A K
Sbjct: 273 TEMNGAFCSSRQMRVGIATPK 293
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/64 (32%), Positives = 38/64 (59%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
++V LD + +E L + F+ FG + S K+ + KG GFV F++ + A +A+ +NG
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV----GKGCGFVQFANRQSAEEAIGNLNG 384
Query: 257 RIVG 268
++G
Sbjct: 385 TVIG 388
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEF-APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 244
+++V +L + D L++ F + ++ AKV+ + GRSKG+GFV F+ E +A+
Sbjct: 117 SIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA 176
Query: 245 EMNGRIVGTKPLYVALAQRKED 310
EMNG T+P+ ++ A K++
Sbjct: 177 EMNGLYCSTRPMRISAATPKKN 198
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/69 (30%), Positives = 39/69 (56%)
Frame = +2
Query: 83 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRI 262
V NLD + +E L+K F+ G + K+ +KG+G+V F + A +AV M G++
Sbjct: 241 VANLDQNVTEEELKKAFSQLGEVIYVKIPA----TKGYGYVQFKTRPSAEEAVQRMQGQV 296
Query: 263 VGTKPLYVA 289
+G + + ++
Sbjct: 297 IGQQAVRIS 305
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
++V +L + D L + F A + ++ AKV+ + GRSKG+GFV F+ E +A+TE
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 248 MNGRIVGTKPLYVALAQRKE 307
MNG+ ++P+ A K+
Sbjct: 235 MNGQYCSSRPMRTGPAANKK 254
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 52.0 bits (119), Expect = 3e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Frame = +2
Query: 71 VNLYVKNLDDTIDDERLRKEFAP-FGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
++++V +L + D L + F+ + ++ +AKV+L+ GRSKG+GFV F E TKA+
Sbjct: 199 LSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Query: 242 TEMNG 256
TEMNG
Sbjct: 259 TEMNG 263
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Frame = +2
Query: 38 LKSERLTRYQG----VNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFV 205
+ S TR +G ++V LD ++ DE L++ F+ FG I S K+ + KG GFV
Sbjct: 291 MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV----GKGCGFV 346
Query: 206 CFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRK 316
F + A +A+ ++NG ++G + + ++ + +++
Sbjct: 347 QFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
Score = 34.7 bits (76), Expect = 0.051
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVT 244
++V +L + +D+ L F A I S KV+ +G S+G+GFV F S + A K +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 245 EMNG 256
E NG
Sbjct: 165 EFNG 168
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 248 MNGRIVGTKPLYVALAQRKE 307
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEF-APFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
++V +L + D L + F A + ++ AKV+++ GR+KG+GFV FS E +A+TE
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 248 MNGRIVGTKPLYVALAQRKE 307
MNG T+P+ + A K+
Sbjct: 217 MNGVPCSTRPMRIGPAASKK 236
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 253
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 254 GRIVGTKPLYVALAQRK 304
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 253
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 254 GRIVGTKPLYVALAQRK 304
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 51.2 bits (117), Expect = 5e-07
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 253
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 254 GRIVGTKPLYVALAQRK 304
G+ + + + V AQ +
Sbjct: 69 GKELDGRVITVNEAQSR 85
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 50.8 bits (116), Expect = 7e-07
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
+YV NL +D RL + F+ G + A+V+ E GRS+GFGFV S+ E A+ +
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 251 NGRIVGTKPLYVALAQRKEDR 313
+G+ + + + V +A+ + R
Sbjct: 269 DGQNLEGRAIKVNVAEERTRR 289
Score = 45.2 bits (102), Expect = 4e-05
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
L+V NL +D + L F GT+ ++V+ + +S+GFGFV S+ EEA KAV +
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 251 NGRIVGTKPLYVALAQRKEDR 313
N V + L V A + R
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSR 195
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 50.8 bits (116), Expect = 7e-07
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEF--APFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVT 244
LYV NL LR+ F A F + SA+V+ D GRS G+GFV F++ EEA A+T
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 245 EMNGRIVGTKPLYVALAQR 301
++NG+ + +P+ + + R
Sbjct: 255 KLNGKEIMGRPITLKFSLR 273
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Frame = +2
Query: 8 QKELKRKFEQLKSERLTRYQGVNL----YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE 175
+KE E + E+ Q NL +V NL ++ + + F GT+ + +++ +
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 176 -DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQR 301
DG+++GF FV +S EEA A+ + + V + + V+ A+R
Sbjct: 130 KDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARR 172
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 50.8 bits (116), Expect = 7e-07
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAV--- 241
++V L + D E L++ F FG I A V+L E G S+GFGFV + S E A A+
Sbjct: 38 IFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQAM 97
Query: 242 --TEMNGRIVGTKP 277
E++GRI+G P
Sbjct: 98 QNKELDGRIIGVHP 111
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/66 (37%), Positives = 40/66 (60%)
Frame = +2
Query: 110 DERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 289
D+ LR+ FAPF + + + R KGFGF+ F S ++A KA+ +NG+IV + ++V
Sbjct: 84 DQSLRQLFAPFARLIKDQ---QTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVE 140
Query: 290 LAQRKE 307
A+ E
Sbjct: 141 TAKEVE 146
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITS----AKVMLED--GRSKGFGFVCFSSPEEATK 235
N++V +L + D L F+ F + +S A+VM + GRS+GFGFV F + ++A
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQT 208
Query: 236 AVTEMNGRIVGTKPL 280
A+ EMNG+ V ++ +
Sbjct: 209 AINEMNGKWVSSRQI 223
Score = 38.3 bits (85), Expect = 0.004
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
++Y N+ + + L++ FA G I S K++ +D S +GFV + A+ A+ +N
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS--YGFVHYFDRRCASMAIMTLN 121
Query: 254 GRIVGTKPLYVALAQ---RKEDRKAH 322
GR + +P+ V A ++ED +H
Sbjct: 122 GRHIFGQPMKVNWAYATGQREDTSSH 147
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 244
Q +YV NL + L + F G +V ++ R KGFGFV +++ +EA A+
Sbjct: 271 QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQ--RDKGFGFVRYNTHDEAALAIQ 328
Query: 245 EMNGR 259
N +
Sbjct: 329 MGNAQ 333
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +2
Query: 62 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 235
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 236 AVTEMNGRIVGTKPLYVALA 295
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +2
Query: 62 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATK 235
Y NLY+ L ++D+ L F+ FG I AKV+ + G SKG+GFV ++ + A
Sbjct: 477 YDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANT 536
Query: 236 AVTEMNGRIVGTKPLYVALA 295
AV MNG + L V +A
Sbjct: 537 AVQAMNGYRFEGRTLAVRIA 556
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 247
N++V +L + D L F+ + T + A+VM + GRS+GFGFV F + ++A A+ E
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDE 199
Query: 248 MNGRIVGTKPL 280
+ G+ +G++ +
Sbjct: 200 ITGKWLGSRQI 210
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
++YV N+ + + L++ FA G + S K++ ++ S +GFV + A A+ +N
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS--YGFVHYFDRRSAGLAILSLN 112
Query: 254 GRIVGTKPLYVALAQ---RKEDRKAH 322
GR + +P+ V A ++ED +H
Sbjct: 113 GRHLFGQPIKVNWAYASGQREDTSSH 138
Score = 33.1 bits (72), Expect = 0.16
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 241
Q +YV NL + L + F G +V ++ R KGFGFV +S+ EA A+
Sbjct: 258 QYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHVEAALAI 314
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 251 NGRIVGTKPLYVALAQRK 304
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
++V L + + +L F +G IT ++M+ + GR +GFGF+ F+ A A+ M
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 251 NGRIVGTKPLYVALAQRK 304
+GR +G K + V A+ K
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 250
+YV NL T+ E L F+ G + SAKV G SK GFGFV FSS E+ A+ +
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVAL 238
Query: 251 NGRIV 265
N ++
Sbjct: 239 NNSLL 243
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
+Y+ N+ T+ +E+L K G + +VM + GRS+ FGF S E+A V ++
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 251 NGRIVGTKPLYVALAQR 301
NG V + + V + ++
Sbjct: 138 NGNTVEGREIKVNITEK 154
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
L++ L ++D++ L+ F+ FG + ++ + GRS+GFGFV F+ +A A M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 251 NGRIVGTKPLYVALA 295
+G+ + +PL ++ A
Sbjct: 103 DGKGLLGRPLRISFA 117
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 253
+V L +DE L++ F+ FG + +K++ E GRS+GFGFV F + A+ EMN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 254 G 256
G
Sbjct: 69 G 69
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/80 (33%), Positives = 41/80 (51%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
LYVKN+ + E+L++ F G +T G + FGFV ++ A KAV +
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
Query: 257 RIVGTKPLYVALAQRKEDRK 316
V +PL V LA+ + +RK
Sbjct: 354 YEVNGQPLEVVLAKPQAERK 373
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
G +++ L + +E LR G I ++M + G SKG+ FV F + + A KA+
Sbjct: 115 GSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 242 TEMNGRIVGTKPLYVALAQRK 304
E++ + K + +L++ K
Sbjct: 175 EELHSKEFKGKTIRCSLSETK 195
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMN 253
++ L T D LR F +G + AKV+L+ GRS+GFGF+ F + +A+ MN
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 254 GRIVGTKPLYVALAQ 298
G + + + V AQ
Sbjct: 70 GMDLDGRTITVDKAQ 84
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
L+VK + + +E L + F+ +G + V+++ R KGF +V FSS EEA KA+ E+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 251 NGRIV 265
N ++V
Sbjct: 83 NAQLV 87
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 53 LTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG-RSKGFGFVCFSSPEEA 229
+T G ++YV L I +E +R+ F+ +G++ + K++ + R K +GFV FS+ A
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 230 TKAVTEMNGRIVGTKPLYV 286
A+ +M+G+ +G + + V
Sbjct: 61 DDAIEDMDGKSIGGRAVRV 79
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +2
Query: 44 SERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSS 217
S+ +R+ ++ V NL + L + F PFG +T V ++ S+GFGFV F S
Sbjct: 165 SDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVS 224
Query: 218 PEEATKAVTEMNG 256
E+A +A+ ++NG
Sbjct: 225 REDAQRAINKLNG 237
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/63 (36%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
++V + + D+ LR+ F+ +G + AK+++ E GRS+GF FV F+S EEA+ A+ ++
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QL 94
Query: 251 NGR 259
+G+
Sbjct: 95 DGQ 97
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
LYV L ++ LR F FG + ++++ R KGF F+ + + EEA KA+ M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 251 NGRIVGTKPLYVALAQRKED 310
+G+ + + ++V A+ + D
Sbjct: 139 HGKFLDGRVIFVEEAKTRSD 158
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
+Y NL + + L+ F + AKV+ E GRS+GFGF+ F S E A+ M
Sbjct: 221 VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATM 280
Query: 251 NGRIVGTKPLYVALAQRKE 307
NG V + L + LA +E
Sbjct: 281 NGVEVEGRALRLNLASERE 299
Score = 46.8 bits (106), Expect = 1e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED- 178
E E + + E+ K + LYV NL TI L + F GT+ +++ +
Sbjct: 93 EEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKV 152
Query: 179 -GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 286
RS+GFGFV S EEA +A+ N +G + + V
Sbjct: 153 TDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKV 189
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
L++ L ++ LR F FG + K++++ RSKG+ F+ +++ E A A+ EM
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 251 NGRIVGTKPLYVALAQRKEDRK 316
NG+I+ + V +A+ K R+
Sbjct: 344 NGKIINGWMIVVDVAKTKPFRQ 365
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 83 VKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 256
V NL + + L + F PFG +T V ++ G S+GFGFV F S E+A +A+ ++NG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 47.2 bits (107), Expect = 9e-06
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 247
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 248 ---MNGRIVGTK 274
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 244
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 245 --EMNGRIVGTK 274
E+NG++V K
Sbjct: 170 FHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 47.2 bits (107), Expect = 9e-06
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED---GRSKGFGFVCFSSPEEATKAVTE 247
L++ + ++ERL++ F+ FG + A V+L+D GR++GFGFV F+ P A +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEA-VILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 248 ---MNGRIVGTK 274
++GR+V K
Sbjct: 67 KHNIDGRLVEAK 78
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 244
++V L ++ + + F FGT T VM + R +GFGF+ + S E K +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 245 --EMNGRIVGTK 274
E+NG++V K
Sbjct: 170 FHELNGKMVEVK 181
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
L+V + D+++LR+ F +G ++ A VM + GR +GFGFV FS P + + E
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 251 NGRIVGTKPLYVALAQRKEDRK 316
+ + T+ + V A +E+++
Sbjct: 68 HS--IDTREVDVKRAMSREEQQ 87
Score = 41.5 bits (93), Expect = 4e-04
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 250
++V L T+ DE R+ F +G +T +M + R +GFGFV F S E+A +V
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSVLHK 170
Query: 251 NGRIVGTKPLYVALAQRKE 307
+ K + V A K+
Sbjct: 171 TFHDLSGKQVEVKRALPKD 189
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 253
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 254 GRIVGTKPLYVALAQRK 304
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 253
+V L DD L FA +G + +K++ E GRS+GFGFV F + A+ MN
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 254 GRIVGTKPLYVALAQRK 304
G+ + + + V AQ +
Sbjct: 71 GQDLDGRSITVNEAQSR 87
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Frame = +2
Query: 41 KSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFS 214
K+E + + + LYV N+ + D +L F PFGT+ S +V + G S+G G+V
Sbjct: 98 KAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMG 157
Query: 215 SPEEATKAVTEMNGRIVGTKPLYV 286
S A A+ ++G VG + + V
Sbjct: 158 SINSAKIAIASLDGTEVGGREMRV 181
Score = 40.7 bits (91), Expect = 8e-04
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 5/84 (5%)
Frame = +2
Query: 20 KRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGR 184
+R E L S +++ Y+ + +YV NL + LR F+ FGTI S +V+ + GR
Sbjct: 192 RRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGR 251
Query: 185 SKGFGFVCFSSPEEATKAVTEMNG 256
++ F F+ F+S EE A++ NG
Sbjct: 252 NRVFAFLSFTSGEERDAALS-FNG 274
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 229
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADG 236
Query: 230 TKAVTEMNGRIV 265
A EM G IV
Sbjct: 237 QAAKDEMQGIIV 248
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
LYV NLD ++ + + F+ FG + V+ + +S+G FV + S E+A KA M
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 251 NGRIVGTKPLYVALA 295
+ +I+ + L V++A
Sbjct: 119 DAKILNGRKLTVSIA 133
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 247
L++ + D+ERL++ F +G + A +M + GR++GFGF+ F+ P A + + +
Sbjct: 17 LFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMDK 76
Query: 248 --MNGRIVGTK 274
++GR V K
Sbjct: 77 HIIDGRTVEAK 87
Score = 41.1 bits (92), Expect = 6e-04
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 238
++V L +I + + F FGTI VM + R +GFGF+ F S E K
Sbjct: 124 IFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Query: 239 VTEMNGRIVGTK 274
E+NG++V K
Sbjct: 184 FHELNGKMVEVK 195
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 253
LYV NL + ++ LRK F FG++ +V E G KGFGFV F+ E+A A+ +N
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NLN 345
Query: 254 GRI 262
G++
Sbjct: 346 GQL 348
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSK--GFGFVCFSSPEEATKAVTEM 250
LYV L D +++ L F PFG I K L+ K FGFV F E+A+ A+ M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 251 NG 256
+G
Sbjct: 75 DG 76
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 44.0 bits (99), Expect = 8e-05
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVML-----EDGRSKGFGFVCFSSPEEA 229
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMNRADG 244
Query: 230 TKAVTEMNGRIV 265
A +M G IV
Sbjct: 245 EAAKEKMQGIIV 256
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 8e-05
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +2
Query: 8 QKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 178
Q+ + R + L+S RLT ++ L+++ L E LR F+ +G + A V+L+
Sbjct: 51 QEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDK 110
Query: 179 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 268
G+SKG+GFV F + A A+ E + +I G
Sbjct: 111 VTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 44.0 bits (99), Expect = 8e-05
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Frame = +2
Query: 8 QKELKRKFEQLKSERLTRYQGVN---LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED 178
Q+ + R + L+S RLT ++ L+++ L E LR F+ +G + A V+L+
Sbjct: 51 QEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDK 110
Query: 179 --GRSKGFGFVCFSSPEEATKAVTEMNGRIVG 268
G+SKG+GFV F + A A+ E + +I G
Sbjct: 111 VTGKSKGYGFVTFMHVDGALLALKEPSKKIDG 142
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +2
Query: 98 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 271
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 272 K 274
K
Sbjct: 86 K 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +2
Query: 98 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 271
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADPNPVIDGR 85
Query: 272 K 274
K
Sbjct: 86 K 86
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 247
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 248 --MNGRIVGTK 274
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 238
++V L +I +E + F FGTI VM + R +GFGF+ F S + K
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 239 VTEMNGRIVGTK 274
E+NG++V K
Sbjct: 172 FHELNGKLVEVK 183
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 247
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 248 --MNGRIVGTK 274
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 238
++V L +I +E + F FGTI VM + R +GFGF+ F S + K
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 239 VTEMNGRIVGTK 274
E+NG++V K
Sbjct: 172 FHELNGKLVEVK 183
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 247
L++ + D+ERLR F+ +G + A +M + GR++GFGF+ F+ P + + + +
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDK 67
Query: 248 --MNGRIVGTK 274
++GR V K
Sbjct: 68 HIIDGRTVEAK 78
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 238
++V L +I +E + F FGTI VM + R +GFGF+ F S + K
Sbjct: 112 IFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKT 171
Query: 239 VTEMNGRIVGTK 274
E+NG++V K
Sbjct: 172 FHELNGKLVEVK 183
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM-LEDGRSKGFGFVCFSSPEEATKAVTEMN 253
L+ NL I + F G + ++ +DG KG+G + F+SPEEA KA+ EMN
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL-EMN 444
Query: 254 GRIVGTKPLYVALAQRK 304
G+++ + + + LA +
Sbjct: 445 GKLLLGRDVRLDLANER 461
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.6 bits (98), Expect = 1e-04
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
+L V+NL E LRK F FG + + + G +GFGFV F P +A A
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 248 MNGRIVGTKPLYVALAQRKEDRK 316
M+G ++ + L V A+ E+RK
Sbjct: 97 MDGYLLLGRELTVVFAE--ENRK 117
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +2
Query: 98 DTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGT 271
+T DE +R+ F FG I A ++ + G+SKG+GFV F + AT+AV + N I G
Sbjct: 27 ETPTDE-MRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVADPNPVIDGR 85
Query: 272 K 274
K
Sbjct: 86 K 86
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 244
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 35 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 94
Query: 245 --EMNGRIVGTK 274
E+NG++V K
Sbjct: 95 FHELNGKMVEVK 106
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 244
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 245 --EMNGRIVGTK 274
E+NG++V K
Sbjct: 168 FHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 238
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 239 VT---EMNGRIVGTK 274
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 43.2 bits (97), Expect = 1e-04
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVT-- 244
++V L ++ + +K FA FG IT VM + R +GFGF+ + S E K +
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 245 --EMNGRIVGTK 274
E+NG++V K
Sbjct: 168 FHELNGKMVEVK 179
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA 238
+ L++ + ++RLR F FG + A +M + GR++GFGFV F+ P A +
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 239 VT---EMNGRIVGTK 274
V ++G+IV K
Sbjct: 64 VLLKHIIDGKIVEAK 78
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
+L V+NL E LR+ F FG + + + G +GFGF+ F P +A +A +
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 248 MNGRIVGTKPLYVALAQRKEDRK 316
M+G ++ + L V A+ E+RK
Sbjct: 98 MDGYLLLGRELTVVFAE--ENRK 118
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 42.7 bits (96), Expect = 2e-04
Identities = 31/76 (40%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 250
+YV L E L F FG I AKV+ + RSKGFGFV F E AT+A
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 251 N----GRIVGTKPLYV 286
N GR V K Y+
Sbjct: 71 NHTIDGRTVNCKLAYL 86
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
++V L + +R+ F FG I A V+ + GRSKG+GFV F E A +A M
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 251 NGRIVGTK 274
N I G +
Sbjct: 84 NPVIDGRR 91
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKA----- 238
+V+ LD D++ L F+ FG + +K++ + G+S+ FGFV F + T A
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 239 VTEMNGRIVGTKPLYVALA-QRKEDRKA 319
V E + V + V +A QR+++R A
Sbjct: 70 VEESRSKCVNVGSITVEVARQRRKNRSA 97
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 80 YVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMN 253
+V L D++ + + F FG + +K+++ E GRSKGF FV F + A+ MN
Sbjct: 47 FVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMN 106
Query: 254 GR 259
G+
Sbjct: 107 GQ 108
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 251 NGRIVGTK 274
I G +
Sbjct: 86 TPIIDGRR 93
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
++V L E LR+ F +G I A V+ + GRSKG+GFV F PE A +A +
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 251 NGRIVGTK 274
I G +
Sbjct: 86 TPIIDGRR 93
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
LYV NL + + +LR+ F FG + ++ L E G+ KGFGF+ F E + A +
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIAL 326
Query: 251 NGRI 262
NG++
Sbjct: 327 NGKL 330
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +2
Query: 77 LYVKNLDDT-IDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 250
+ VKNL + +ERLR F+ G I K+ + DG+S+ F ++ F + +EA A+T +
Sbjct: 4 IIVKNLPSKHVTEERLRDVFSRKGEIADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYV 63
Query: 251 NGRIVGTKPLYVALA 295
N + T + V +A
Sbjct: 64 NKCFIDTYRISVEVA 78
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAVTEM 250
L V+ LD+ D+E LR EF+ I +++ + S+GF FV F S E+ATKA+
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 251 N 253
N
Sbjct: 520 N 520
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
L V + ID + L+ + FG + VM + GRS+GFG+V F+S E+A A+
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL--K 62
Query: 251 NGRIVGTKPLYVALAQRKEDRK 316
+G + L V +A KE+ +
Sbjct: 63 GEHFLGNRILEVKVATPKEEMR 84
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 119 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 119 LRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
LR F FG I A V+ + GRSKG+GFV F PE A KA +
Sbjct: 23 LRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 241
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 74 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 133
Query: 242 TEMNGRIVGTKPLYVALAQRKEDR 313
++ ++ + + V A+R+ R
Sbjct: 134 RSLDHSVLQGRVITVEKARRRRGR 157
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +2
Query: 5 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-- 178
+Q E+KR + S ++ ++V + ++DD+ ++ F FG + ++M +
Sbjct: 109 KQVEIKRTIPR-GSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHST 167
Query: 179 GRSKGFGFVCFSSPE 223
GRS+GFGFV + S +
Sbjct: 168 GRSRGFGFVTYESED 182
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
++V L K F +G IT + +M + G+ +GFGFV ++ K + +
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD- 102
Query: 251 NGRIVG 268
N I+G
Sbjct: 103 NHIIIG 108
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 247
N++V+ L E L+ F +G IT V+++ GR+KGFGFV F + + A A+
Sbjct: 164 NIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKN 223
Query: 248 MNGRI 262
R+
Sbjct: 224 PEKRM 228
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
++V L ++++ L+ F +G I ++M + GRS+GFGFV F + + + ++
Sbjct: 159 IFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDG 218
Query: 251 NGRIVGTKPLYVALAQRK 304
+G K + + A+ K
Sbjct: 219 KVHELGDKQVEIKRAEPK 236
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
L+V + E F FG + + +M + G +GFGFV F+ A K + E
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 40.7 bits (91), Expect = 8e-04
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +2
Query: 62 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATK 235
Y L+V + +E L++ F+ +G + A V E G+ +GFGFV F++ + K
Sbjct: 3 YDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVK 62
Query: 236 AVTEMNGRIVGTKPLYVALAQRKED 310
A+ + + I+G KP+ V A RK +
Sbjct: 63 ALRDTH-FILG-KPVDVRKAIRKHE 85
Score = 36.7 bits (81), Expect = 0.013
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG---RSKGFGFVCFSSPEEATKAVTE 247
++V L +E + F FG T VM DG R +GFGFV + S E++ + V +
Sbjct: 122 IFVGGLSSNTTEEEFKSYFERFGRTTDVVVM-HDGVTNRPRGFGFVTYDS-EDSVEVVMQ 179
Query: 248 MNGRIVGTKPLYVALAQRKE 307
N + K + V A KE
Sbjct: 180 SNFHELSDKRVEVKRAIPKE 199
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 244
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 85 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 144
Query: 245 EMNGRIVGTKPLYVAL 292
+ N + KP+ + +
Sbjct: 145 KYNDVQLDGKPMKIEI 160
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 244
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 21 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 80
Query: 245 EMNGRIVGTKPLYVAL 292
+ N + KP+ + +
Sbjct: 81 KYNDVQLDGKPMKIEI 96
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 244
G LY+ NLD + +E +++ FA G + V + GRSKG V +S +A AV
Sbjct: 87 GTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVK 146
Query: 245 EMNGRIVGTKPLYVAL 292
+ N + KP+ + +
Sbjct: 147 KYNDVQLDGKPMKIEI 162
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
L ++NL LR F FG + + G +GFGFV + E+A +A+ M
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 251 NGRIVGTKPLYVALAQRKEDRK 316
N +++G + + + A+ E+RK
Sbjct: 109 NHKVIGGREIAIVFAE--ENRK 128
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+YV NLD + + L EF FG + S V R G+ F+ F P +A A+ ++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA---RRPPGYAFLDFEDPRDARDAIRALDG 60
Query: 257 R 259
+
Sbjct: 61 K 61
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +2
Query: 176 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKA 319
DG+S+ FGF+ F S +EA +A+ N +GT + V +A + D A
Sbjct: 5 DGKSRQFGFIGFRSAQEAQQAIKYFNNTYLGTSLIIVEIAHKVGDENA 52
Score = 35.9 bits (79), Expect = 0.022
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKA 238
L+VKN+ LR+ F+PFG I S ++ ++ G+ G+ FV F + +EA A
Sbjct: 671 LHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNA 725
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
++V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + +++
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 251 N 253
N
Sbjct: 171 N 171
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 247
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 248 --MNGRIVGTK 274
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
++V + T+ ++ L+ FA +G + +V+ E RS+GFGFV F S E + +++
Sbjct: 111 IFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 251 N 253
N
Sbjct: 171 N 171
Score = 35.9 bits (79), Expect = 0.022
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE- 247
+++ L + K F +G IT + +M + G+ +GFGF+ F+ P K + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDT 80
Query: 248 --MNGRIVGTK 274
+NG+ V K
Sbjct: 81 HVINGKQVEIK 91
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSP 220
L++ + D+ LR+ F+ FG + VM E GR +GFGFV FS P
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP 57
Score = 35.9 bits (79), Expect = 0.022
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEAT----KA 238
++V L + + R F +G ++ A +M++ R +GFGFV F S + K
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT 171
Query: 239 VTEMNGRIVGTK 274
++NG+ V K
Sbjct: 172 FHDLNGKQVEVK 183
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 250
L+V L+ +DE L F+ FGT+ SA V+ + G S + F+ F + E +A +M
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 251 NGRIVGTKPLYVALAQ 298
+ ++ + ++V +Q
Sbjct: 305 DNALIDDRRIHVDFSQ 320
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/90 (28%), Positives = 44/90 (48%)
Frame = +2
Query: 29 FEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVC 208
F QL + QG +L + NL+ T+ LR F +G + K + E + FV
Sbjct: 170 FPQLNAVPEGNNQG-SLVIMNLEPTVSSSTLRHIFQVYGEV---KQVRETPCKREQRFVE 225
Query: 209 FSSPEEATKAVTEMNGRIVGTKPLYVALAQ 298
F +A KA+ MNG+++ KP+ + ++
Sbjct: 226 FFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/80 (28%), Positives = 43/80 (53%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
L+V+N+D +I+D L F FG + + + G+++GF V + A KA ++G
Sbjct: 213 LFVRNVDSSIEDCELGVLFKQFGDV---RALHTAGKNRGFIMVSYYDIRAAQKAARALHG 269
Query: 257 RIVGTKPLYVALAQRKEDRK 316
R++ + L + + KE+ K
Sbjct: 270 RLLRGRKLDIRYSIPKENPK 289
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 241
G LYV L + D+ L FA G + S +++E S+GF FV SS ++A + +
Sbjct: 71 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 130
Query: 242 TEMNGRIV 265
+N ++
Sbjct: 131 KYLNQSVL 138
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR--SKGFGFVCFSSPEEATKAV 241
G LYV L + D+ L FA G + S +++E S+GF FV SS ++A + +
Sbjct: 70 GTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCI 129
Query: 242 TEMNGRIV 265
+N ++
Sbjct: 130 KYLNQSVL 137
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+YV NLD + + L EF FG I S V R G+ F+ F +A A+ E++G
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVA---RRPPGYAFLDFEDSRDARDAIREVDG 60
Query: 257 R 259
+
Sbjct: 61 K 61
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 113 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 274
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 113 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 274
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 113 ERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 274
E ++K F FG I A V+ + GRSKG+GFV F E A A + I G +
Sbjct: 27 ETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDATPVIDGRR 82
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 253
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 254 GRIV---GTKPLYVALAQRKEDR 313
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMN 253
L+V +L+ ++ + + F FG + +M ++ R S+G GFV +SS E A A+ +N
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLN 272
Query: 254 GRIV---GTKPLYVALAQRKEDR 313
G +PL V A+ K +
Sbjct: 273 GTYTMRGCNQPLIVRFAEPKRPK 295
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
L+ NL I+ + F G + + +DG +GFG V F+S EEA KA+ E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EF 357
Query: 251 NGRIVGTKPLYVALAQRKEDR 313
+GR + + + + +AQ + +R
Sbjct: 358 HGRPLLGREIRLDIAQERGER 378
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 253
L+V NL + F G + S ++M+ +G+ G+GFV F+S +E KA+ N
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKN 305
Query: 254 GRIVGTKPLYVALAQ 298
G + +++ +A+
Sbjct: 306 GEYLHDHKIFIDVAK 320
Score = 35.9 bits (79), Expect = 0.022
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMN 253
L+V NL + K F + ++++ G G GFV F+S EA KA+ +MN
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 254 GRIVGTKPLYVALAQ 298
G + ++ +++ + +
Sbjct: 551 GENLRSREIFLDVVE 565
Score = 33.9 bits (74), Expect = 0.089
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 253
L+V NL + F G + ++++ G+ G GFV F+S EA +A+ + N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 254 GRIVGTKPLYVALAQRK 304
G + +++ +A +K
Sbjct: 189 GECLDNNKIFLDVANKK 205
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSSPEEATKA 238
+G ++YV++L + + L EF FG IT+ + + + R G +GFV F + A +A
Sbjct: 317 EGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRA 376
Query: 239 VTEMNGRIVGTK 274
+ +I G +
Sbjct: 377 IEASPVKIGGLR 388
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+YV ++D + +E L F G + +V + F F+ F++ EE +A M+G
Sbjct: 171 VYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTN-EEGARAALSMSG 229
Query: 257 RIVGTKPLYV 286
++G PL V
Sbjct: 230 TVLGFYPLKV 239
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 56 TRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEA 229
++ Q L ++NL ++ F+ G + + E G KGF FV F+ ++A
Sbjct: 326 SKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDA 385
Query: 230 TKAVTEMNGRIVGTKPLYVALAQRK 304
A+ + NG + G +P+ V A K
Sbjct: 386 ANAIKKFNGHMFGKRPIAVDWAVPK 410
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 248 MNGRIVGTKPLYVALAQ 298
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTE 247
+L V N+ + L FA +G + + + G S+GF FV + +EA KAV
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 248 MNGRIVGTKPLYVALAQ 298
++GR+V + + V A+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 37.5 bits (83), Expect = 0.007
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Frame = +2
Query: 2 ERQKELK-RKFEQLKSERLTRYQ----GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKV 166
+RQ+ L R FE L S+ Q G + V + + +E + F FG I + +
Sbjct: 67 DRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNL 126
Query: 167 MLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 256
L+ G KG+ + + EEA A++ MNG
Sbjct: 127 NLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCF--SSPEEATKAV 241
GV L+V L +++ + L K F+P GT+ + + + GRS F ++ F SS TK
Sbjct: 9 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRS--FAYIDFSPSSTNSLTKLF 66
Query: 242 TEMNG 256
+ NG
Sbjct: 67 STYNG 71
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVT 244
G LY+ NLD + +E +++ F+ G + + + GRSKG V FS +A AV
Sbjct: 107 GTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVK 166
Query: 245 EMN 253
N
Sbjct: 167 RYN 169
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 241
++V NL + LR+ F FG + A V+ E GRSKG+GF+ F +A+
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRAL 70
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTE 247
N++V+ E L+ F +G I V+++ GR KG+GFV F + + A +A+
Sbjct: 409 NIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
Query: 248 MNGRI 262
R+
Sbjct: 469 PEKRM 473
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
LY+ + + + F+ FGT+ +V + G+SK FGF+ F PE A A M
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 251 N 253
N
Sbjct: 122 N 122
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 65 QGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCF 211
+G NL++ N+ D+ L F FG + SAKV ++ G SK FG + F
Sbjct: 346 EGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
Score = 35.9 bits (79), Expect = 0.022
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML-EDGRSKGFGFVCFSSPEEATKAVTEMN 253
L+V L + + ++ F+ +GTI +++ SKG F+ + + E+A A+ +N
Sbjct: 108 LFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESIN 167
Query: 254 G--RIVG-TKPLYVALAQRKEDR 313
G ++ G T PL V A + +R
Sbjct: 168 GKHKMEGSTVPLVVKWADTERER 190
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAV 241
G +LYV L + + L FA G +T ++L+ S+GFGF+ S +A + +
Sbjct: 44 GNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCI 103
Query: 242 TEMNGRIV 265
++ ++
Sbjct: 104 RSLDHSVL 111
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 36.3 bits (80), Expect = 0.017
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
LYV+NL I E + F +G I ++ D +KG FV + +A AV ++G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGC-DKATKGTAFVVYEDIYDAKNAVDHLSG 79
Query: 257 RIVGTKPLYVALAQRKEDRK 316
V + L V Q + K
Sbjct: 80 FNVANRYLIVLYYQHAKMSK 99
>At4g38080.1 68417.m05378 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member: At2g22510
[Arabidopsis thaliana]
Length = 128
Score = 35.5 bits (78), Expect = 0.029
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +2
Query: 419 SLPPAPRYYGPAQMT--QIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 574
++PP P P Q T Q +PT P+ PP+ PSTQ S +QPT P+
Sbjct: 52 TMPPVPSLPTPGQQTLPQPQPTLPQPTGLPPM-PSTQIPSLPNQVQPTIPNIPQ 104
>At4g28300.2 68417.m04053 hydroxyproline-rich glycoprotein family
protein
Length = 438
Score = 35.5 bits (78), Expect = 0.029
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +2
Query: 389 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 568
P S F P PPAP + AQ W QP RP Q++ Y PTY PA
Sbjct: 208 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PTYSPA 259
Query: 569 P 571
P
Sbjct: 260 P 260
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 419 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 592
S PP+ PAQ +Q P P P PS+ ++ Q + P P+A QS+
Sbjct: 199 STPPSQLQAPPAQ-SQFMPPPPA-----PSHPSSAQTQSFPQYQQNWPPQPQARPQSS 250
>At4g28300.1 68417.m04052 hydroxyproline-rich glycoprotein family
protein
Length = 496
Score = 35.5 bits (78), Expect = 0.029
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = +2
Query: 389 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPA 568
P S F P PPAP + AQ W QP RP Q++ Y PTY PA
Sbjct: 266 PPAQSQFMPP--PPAPSHPSSAQTQSFPQYQQNWPPQPQARP--QSSGGY----PTYSPA 317
Query: 569 P 571
P
Sbjct: 318 P 318
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 419 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 592
S PP+ PAQ +Q P P P PS+ ++ Q + P P+A QS+
Sbjct: 257 STPPSQLQAPPAQ-SQFMPPPPA-----PSHPSSAQTQSFPQYQQNWPPQPQARPQSS 308
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 35.1 bits (77), Expect = 0.038
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 241
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 242 -TEMNGRIVGTKP 277
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 35.1 bits (77), Expect = 0.038
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 241
++YV N+D E ++ F GT+ ++++ G+ KGF +V F E +A+
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLN 149
Query: 242 -TEMNGRIVGTKP 277
+E++GR + P
Sbjct: 150 ESELHGRQLKVSP 162
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 35.1 bits (77), Expect = 0.038
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 592
P PP P Y P Q + +P TP ++ PPV+P P +P P P T
Sbjct: 474 PVKPPTPTYSPPVQPPPVQKPPTPTYS--PPVKPPPIQKPPTPTYSPPIKPPPVKPPTPT 531
Query: 593 IRTSLGARPI 622
+ P+
Sbjct: 532 YSPPIKPPPV 541
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIRT 601
PP P Y P + ++P TP ++ PPV+P P +P P + P T
Sbjct: 461 PPTPTYSPPIKPPPVKPPTPTYS--PPVQPPPVQKPPTPTYSPPVKPPPIQKPPTPTYSP 518
Query: 602 SLGARPI 622
+ P+
Sbjct: 519 PIKPPPV 525
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
PP P Y P ++ ++P TP ++ PPV+P P +P P
Sbjct: 411 PPTPTYSPPIKLPPVKPPTPIYS--PPVKPPPVHKPPTPIYSPPVKPPP 457
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
PP P Y P + ++P TP ++ PP++P P +P P
Sbjct: 511 PPTPTYSPPIKPPPVKPPTPTYS--PPIKPPPVHKPPTPTYSPPIKPPP 557
Score = 31.5 bits (68), Expect = 0.47
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 592
P PP P Y P + + +P TP ++ PPV+P P +P P P T
Sbjct: 424 PVKPPTPIYSPPVKPPPVHKPPTPIYS--PPVKPPPVHKPPTPTYSPPIKPPPVKPPTPT 481
Query: 593 IRTSLGARPI 622
+ P+
Sbjct: 482 YSPPVQPPPV 491
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
PP P Y P + ++P TP ++ PPV+P P +P P
Sbjct: 327 PPTPTYSPPIKPPPVKPPTPIYS--PPVKPPPVHKPPTPIYSPPVKPPP 373
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 422 LPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
LPP P Y P + ++ P TP ++ PPV+P P +P P
Sbjct: 679 LPPTPTYSPPVKPPPVQVPPTPTYS--PPVKPPPVQVPPTPTYSPPIKPPP 727
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIR 598
PP P Y P + ++ P TP ++ PPV+P P +P P + P T
Sbjct: 663 PPTPTYSPPVKPPPVQLPPTPTYS--PPVKPPPVQVPPTPTYSPPVKPPPVQVPPTPTYS 720
Query: 599 TSLGARPI 622
+ P+
Sbjct: 721 PPIKPPPV 728
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP-RAPAQSTIR 598
PP P Y P + + +P TP ++ PPV+P P +P P + P T
Sbjct: 646 PPTPTYSPPIKPPPVQKPPTPTYS--PPVKPPPVQLPPTPTYSPPVKPPPVQVPPTPTYS 703
Query: 599 TSLGARPI 622
+ P+
Sbjct: 704 PPVKPPPV 711
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 601
PP P Y P + + +P TP ++ PP++P + P Y P + P T T
Sbjct: 225 PPTPTYSPPVKPPPVHKPPTPIYS--PPIKPPP----VHKPPTPIYSPPVKPPPVQTPPT 278
Query: 602 SLGARPI 622
+ + P+
Sbjct: 279 PIYSPPV 285
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
P PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 524 PVKPPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----IHKPPTPTYSPPIKPP 573
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 601
PP P Y P + ++ P TP ++ PPV+P + PTY P ++P T
Sbjct: 259 PPTPIYSPPVKPPPVQTPPTPIYS--PPVKPPP----VHKPPTPTYSPPVKSPPVQKPPT 312
Query: 602 SLGARPI 622
+ PI
Sbjct: 313 PTYSPPI 319
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
PP P Y P + I +P TP ++ PP++P + PTY P + P
Sbjct: 544 PPTPTYSPPIKPPPIHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 590
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
PP P Y P + ++ P TP ++ PP++P + PTY P + P
Sbjct: 141 PPTPSYSPPVKPPPVQMPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 187
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
PP P Y P + +P TP ++ PP++P P +P P
Sbjct: 175 PPTPTYSPPIKPPVHKPPTPIYS--PPIKPPPVHKPPTPIYSPPIKPPP 221
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRT 601
PP P Y P + + +P TP ++ PP++P + PTY P + P T
Sbjct: 191 PPTPIYSPPIKPPPVHKPPTPIYS--PPIKPPP----VHKPPTPTYSPPVKPPPVHKPPT 244
Query: 602 SLGARPI 622
+ + PI
Sbjct: 245 PIYSPPI 251
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 561 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 607
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 578 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 624
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 595 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 641
Score = 27.9 bits (59), Expect = 5.8
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQI-RPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
PP P Y P + + +P TP ++ PP++P + PTY P + P
Sbjct: 612 PPTPTYSPPIKPPPVHKPPTPTYS--PPIKPPP----VHKPPTPTYSPPIKPP 658
>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
chloroplast (DRT111) nearly identical to SP|P42698
DNA-damage-repair/toleration protein DRT111, chloroplast
precursor {Arabidopsis thaliana}; contains Pfam profiles
PF01585: G-patch domain, PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 387
Score = 35.1 bits (77), Expect = 0.038
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Frame = +2
Query: 92 LDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFG-------FVCFSSPEEATKAVTEM 250
+DD ++DE + E +GT+T +V++ + F FV FS PEE TKA+ ++
Sbjct: 296 VDDELEDE-VGGECGKYGTVT--RVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDL 352
Query: 251 NGRIVGTKPLYVALAQRKEDRKAHL 325
+GR G + + ++ K L
Sbjct: 353 DGRYFGGRTVRATFYDEEKFSKNEL 377
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 34.7 bits (76), Expect = 0.051
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
L+V N D E + K F P+G +T+ ++ + F FV F + E+ATKA+
Sbjct: 95 LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------RNFSFVQFETQEDATKALEATQ 148
Query: 254 GRIVGTKPLYVALAQRKEDRK 316
+ + + V A + +D +
Sbjct: 149 RSKILDRVVSVEYALKDDDER 169
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 34.3 bits (75), Expect = 0.067
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTI---DDERLRKEFAPFGTITSAKVML 172
E + + K E+ ++ + Q ++V NL I + E ++F P + K
Sbjct: 142 EFRSDTKPPEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHH 201
Query: 173 EDGRSKGFGFVCFSSPEEATKAV----TEMNGRIVGTK 274
E ++ GFGF+ +++ + A KAV E +GRI+ K
Sbjct: 202 EVEKNAGFGFIIYAAEKSAMKAVEFDGVEFHGRILTVK 239
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 34.3 bits (75), Expect = 0.067
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 604
PP+PR P ++ RPTTP+ P P + + A + YRP P P Q T
Sbjct: 275 PPSPRS-DPPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLPVQHASATK 328
Query: 605 L 607
+
Sbjct: 329 I 329
Score = 30.3 bits (65), Expect = 1.1
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +2
Query: 389 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST-QAASAYAN 544
P GAS + S PP+PR P T RP +PR A PP RP+T + S A+
Sbjct: 203 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 261
Query: 545 MQPTYRPAPRAPAQSTIRT 601
P P P + R+
Sbjct: 262 APRLDAPRPTTPKPPSPRS 280
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 34.3 bits (75), Expect = 0.067
Identities = 20/61 (32%), Positives = 28/61 (45%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 604
PP+PR P ++ RPTTP+ P P + + A + YRP P P Q T
Sbjct: 274 PPSPRS-DPPRLDAPRPTTPK-----PPSPRSVSPRAVQRREIVYRPEPTLPVQHASATK 327
Query: 605 L 607
+
Sbjct: 328 I 328
Score = 30.3 bits (65), Expect = 1.1
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Frame = +2
Query: 389 PSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPR---WNAQPP----VRPST-QAASAYAN 544
P GAS + S PP+PR P T RP +PR A PP RP+T + S A+
Sbjct: 202 PRGASPQAISSKPPSPRAEPPTLDTP-RPPSPRAASLRADPPRLDAARPTTPRPPSPLAD 260
Query: 545 MQPTYRPAPRAPAQSTIRT 601
P P P + R+
Sbjct: 261 APRLDAPRPTTPKPPSPRS 279
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 34.3 bits (75), Expect = 0.067
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +2
Query: 2 ERQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-- 175
ER +++ + + E L + ++V L + L F +G I K +++
Sbjct: 108 ERHRDVANRIRIVADEDLVHRK---IFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKV 164
Query: 176 DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 295
G+SKG+GF+ F S A A+ + +I GT+ LA
Sbjct: 165 SGQSKGYGFILFKSRSGARNALKQPQKKI-GTRMTACQLA 203
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 34.3 bits (75), Expect = 0.067
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+YV ++D ++ +E L F+ G + ++ + F FV FS + A A++ + G
Sbjct: 130 VYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSDDQGARSALS-LGG 188
Query: 257 RIVGTKPLYV 286
++G P+ V
Sbjct: 189 TMIGYYPVRV 198
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 33.9 bits (74), Expect = 0.089
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 187 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 243
Query: 257 RIVGTKPLYVALAQRKED 310
++ + L + + KE+
Sbjct: 244 TLLRKRTLDIHFSIPKEN 261
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 33.9 bits (74), Expect = 0.089
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
L+V+N++ +++D L F PFG I S + +S+GF + + A A+ +
Sbjct: 200 LFVRNINSSVEDSELSALFEPFGEIRS---LYTACKSRGFVMISYYDIRAAHAAMRALQN 256
Query: 257 RIVGTKPLYVALAQRKED 310
++ + L + + KE+
Sbjct: 257 TLLRKRTLDIHFSIPKEN 274
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.9 bits (74), Expect = 0.089
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 251 NGRIV 265
RI+
Sbjct: 166 KKRIL 170
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.9 bits (74), Expect = 0.089
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 250
++V L E L F +G I V+++ G++KGFGFV F + + A +A+ E
Sbjct: 106 IFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEP 165
Query: 251 NGRIV 265
RI+
Sbjct: 166 KKRIL 170
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 33.9 bits (74), Expect = 0.089
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +2
Query: 71 VNLYVKNL-DDTIDDERLRKEFAPFGTITSAKV-----MLEDGRSKGFGFVCFSSPEEAT 232
V LY+KNL D + D+ + F + AK ++++GR +G F+ F S E A
Sbjct: 352 VVLYIKNLAKDVVIDDFYYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAH 411
Query: 233 KAVTEMNGRIVGTKPLYV 286
+A+ +NG + KP+ +
Sbjct: 412 RALNLVNGFVFKGKPMII 429
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 251 NGRIVGTKPLYVALAQR 301
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 251 NGRIVGTKPLYVALAQR 301
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 250
++V L E L + F +G I K + + G+SKG+GF+ + S A A+ +
Sbjct: 142 IFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQP 201
Query: 251 NGRIVGTKPLYVALAQR 301
+I G++ LA +
Sbjct: 202 QKKI-GSRMTACQLASK 217
>At3g10070.1 68416.m01207 transcription initiation factor IID
(TFIID) subunit A family protein similar to hypothetical
protein GB:CAB10099 [Schizosaccharomyces pombe];
contains Pfam profile PF03847: Transcription initiation
factor TFIID subunit A
Length = 539
Score = 33.5 bits (73), Expect = 0.12
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 595
P PP P P+ +TQI+P TP N P S+ S+ A P+ P P P +
Sbjct: 14 PETPPQPSDSKPSTLTQIQP-TPSTNPSPSSVVSS-IPSSPAPQSPSLNPNPNPPQYTRP 71
Query: 596 RTS 604
TS
Sbjct: 72 VTS 74
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+YV +LD + +E+L F G + ++ + F F+ F+ E A A+ ++G
Sbjct: 175 VYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTAL-NLSG 233
Query: 257 RIVGTKPLYV 286
++G P+ V
Sbjct: 234 TMLGFYPVKV 243
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/70 (22%), Positives = 34/70 (48%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+YV ++D + +E+L F FG + ++ + F F+ F+ E + ++G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTD-EVGARTALNLSG 210
Query: 257 RIVGTKPLYV 286
++G P+ V
Sbjct: 211 TMLGFYPVKV 220
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 250
+YV + + + L F+ +G I ++ + G +SKGF F+ + AV +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 251 NGRIV 265
NG +V
Sbjct: 98 NGALV 102
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 33.1 bits (72), Expect = 0.16
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +2
Query: 77 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+ +
Sbjct: 71 LFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTH 124
Query: 254 GRIVGTKPLYVALAQR----KEDRKA 319
+ K + V A R +EDR A
Sbjct: 125 NSKLLDKVVSVEYALREAGEREDRYA 150
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 33.1 bits (72), Expect = 0.16
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +2
Query: 77 LYVKNLDDTIDDER-LRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
L+V N D ER + + F P+G + + ++ + F FV F++ E+ATKA+ +
Sbjct: 97 LFVINFDPIRTRERDMERHFEPYGKVLNVRMR------RNFAFVQFATQEDATKALDSTH 150
Query: 254 GRIVGTKPLYVALAQR----KEDRKA 319
+ K + V A R +EDR A
Sbjct: 151 NSKLLDKVVSVEYALREAGEREDRYA 176
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAV--- 241
++YV N+D E +++ F GT+ ++ + G+ KGF +V F E ++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILN 163
Query: 242 -TEMNGR 259
+E++GR
Sbjct: 164 ESELHGR 170
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/74 (22%), Positives = 39/74 (52%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+YV ++D+ + +E+L F G + ++ + F F+ F+ E A A+ + +G
Sbjct: 139 VYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEFTDAEGARSALRK-SG 197
Query: 257 RIVGTKPLYVALAQ 298
+ G+ P+ V +++
Sbjct: 198 TMFGSHPIRVFMSK 211
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
+YV NLD + + L EF FG + + V R G+ F+ F +A A++ ++
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA---RRPPGYAFLEFDDERDALDAISALD 59
>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 427
Score = 32.7 bits (71), Expect = 0.21
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 484 WSCRSYLSHLSWSIVTWCW 428
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 32.7 bits (71), Expect = 0.21
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 484 WSCRSYLSHLSWSIVTWCW 428
W Y+SHL S++TWCW
Sbjct: 170 WRILDYMSHLPESLLTWCW 188
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 32.3 bits (70), Expect = 0.27
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV 241
G L+V +L D L E +G + K E G+SKG+ V F P A+
Sbjct: 233 GAFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACK 292
Query: 242 TEMNGRIVGTKPLYVALA 295
+NG +P V A
Sbjct: 293 DALNGYPFNGRPCVVEYA 310
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKV-MLEDGRSKGFGFVCFSSPEEATKAVTEMN 253
L +N+ T E +R F +G++ ++ M + R++G F+ +SPEEA A+ +
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLE 155
Query: 254 GRIVGTKPLYVALAQRKEDR 313
+ L V A+ K+ +
Sbjct: 156 SCEYEGRRLKVDYAKTKKKK 175
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEM 250
L+V L ++ LR+ + +G I + +++ + G S+G+GFV + + +E +A +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 251 NGRIVGTKPLYV 286
+ ++ + + V
Sbjct: 126 HHSLIDGREIIV 137
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 32.3 bits (70), Expect = 0.27
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 35 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLE-DGRSKGFGFVCF 211
Q K E + + V NL ++ F + S ++++ +G+ G+GFV F
Sbjct: 146 QSKDETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEF 205
Query: 212 SSPEEATKAVTEMNG 256
+S A KA+ E NG
Sbjct: 206 ASAYGANKALEEKNG 220
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +2
Query: 131 FAPFGTITSAKVMLED-GRSKGFGFVCFSSPEEATKAVTEMNGRI 262
F+ G I +++++ G G GFV F+S EA KA+ + G+I
Sbjct: 396 FSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
>At2g20860.1 68415.m02458 lipoic acid synthase (LIP1) identical to
gi:3928758 contains Pfam profile PF04055: radical SAM
domain protein
Length = 374
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 89 NLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS 187
N ++D R+ KE+AP GT+T VML G +
Sbjct: 251 NFKQSLDVLRMAKEYAPAGTLTKTSVMLGCGET 283
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 250
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 251 NGRIVGTK 274
+G + K
Sbjct: 160 DGAQIDGK 167
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 31.9 bits (69), Expect = 0.36
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRS--KGFGFVCFSSPEEATKAVTEM 250
L+V +L +++ L++ F FG + ++ ++ + +G G+V F + +A KA M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 251 NGRIVGTK 274
+G + K
Sbjct: 160 DGAQIDGK 167
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 113 ERLRKEFAPFGTITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 274
E + F +G I A ++ + RSKG+GFV F + AT+A + I G +
Sbjct: 31 EAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRR 86
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 31.5 bits (68), Expect = 0.47
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 467 IRPTTPRWNAQPPVRPSTQAASAYANMQPT---YRPAPRAPAQSTIRTSLGARPIT 625
IRP++P + RPST ++ A+ T RP + + R SL +RP T
Sbjct: 191 IRPSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPST 246
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
++V L + ++R+ FG + ++ E G SKG+ F + P A +
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAAL 436
Query: 251 NGRIVGTKPLYVALA 295
NG +G K L V A
Sbjct: 437 NGIKMGDKTLTVRRA 451
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 131 FAPFGTITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 298
F G + S ++++ + + G+GFV F+SP A A+ + NG + +++ +A+
Sbjct: 702 FNDVGEVVSVRLIVSPESKHVGYGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAK 758
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 59 RYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKA 238
R G ++Y+K L L EF FG I + + + + FGFV F S A
Sbjct: 308 RALGPSIYLKGLPLDATPALLENEFQKFGLIRTNGIQVRSQKGFCFGFVEFESASSMQSA 367
Query: 239 V 241
+
Sbjct: 368 I 368
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG 256
+YV ++D ++ +E L F+ G + ++ + F FV F+ + A +A++ + G
Sbjct: 143 VYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALS-LGG 201
Query: 257 RIVGTKPLYV 286
++G P+ V
Sbjct: 202 TMLGFYPVRV 211
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 31.1 bits (67), Expect = 0.63
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQS 589
PPAP P P P PP++PS A S AN P P P ++
Sbjct: 155 PPAPPASDPTNSPPASPLDP--TNPPPIQPSGPATSPPANPNAPPSPFPTVPPKT 207
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 30.7 bits (66), Expect = 0.83
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 419 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 553
S PP P + P T RP P + P P QAA+ Y P
Sbjct: 151 SPPPPPVLFSPPPPTVTRPPPPPTITRSPPPPRPQAAAYYKKTPP 195
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 30.7 bits (66), Expect = 0.83
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQ-IRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 592
PS+ P+P P+ + PTTP PP P+T PT +P S
Sbjct: 452 PSIVPSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSP 511
Query: 593 IRTSLGARP 619
S G P
Sbjct: 512 TTPSPGGSP 520
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Frame = +2
Query: 413 VPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPS---TQAASAYANMQPTYRPAPRAPA 583
VPS P P G I P+ P PP PS + + + P+ P+P +P
Sbjct: 410 VPSPPTTPSPGGSPPSPSISPSPPITVPSPPTTPSPGGSPPSPSIVPSPPSTTPSPGSPP 469
Query: 584 QSTIRTSLGARP 619
S + G P
Sbjct: 470 TSPTTPTPGGSP 481
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/64 (26%), Positives = 23/64 (35%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 595
PS P P G I P+ P PP P++ + + P P P ST
Sbjct: 508 PSSPTTPSPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTP 567
Query: 596 RTSL 607
T +
Sbjct: 568 PTPI 571
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Frame = +2
Query: 389 PSGASGFFVPSLPP-APRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 565
PS S P PP +P P PTTP PP P+T PT P
Sbjct: 456 PSPPSTTPSPGSPPTSPTTPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPSSPT-TP 514
Query: 566 AP 571
+P
Sbjct: 515 SP 516
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQ 586
P PR+ A Q T R++ Q P +P + + N QPT R P+ P+Q
Sbjct: 346 PQRPRFSNQAPNQQ---PTGRFDPQSPNQPPSAPRPQFPNQQPTGRFDPQFPSQ 396
Score = 30.7 bits (66), Expect = 0.83
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 386 QPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRP 565
QP+G PS PP P++ A Q +T R+N Q P + + S + + P +P
Sbjct: 384 QPTGRFDPQFPSQPPRPQFPNQAPNQQ---STGRFNPQFPNQRPSPPQSRFPDQAPNQQP 440
Query: 566 APRAP 580
+ +P
Sbjct: 441 SGPSP 445
Score = 27.9 bits (59), Expect = 5.8
Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +2
Query: 386 QPSGASGFFVPSLP-PAPRYYGPAQMTQ----IRPTTPRWNAQPPVRPSTQAASAYANMQ 550
QPSG S P P PR+ A Q P P PP RP T+ + +N Q
Sbjct: 439 QPSGPSPNRHPDRQGPPPRFQNQAPNQQPTGRFEPQPPNPPRAPP-RPQTRLPNETSNEQ 497
Query: 551 PTYRPAPRAPA 583
PT PA
Sbjct: 498 PTAPGRSSGPA 508
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 427 SSTTLLWTSSNDSNKTYNSKVECTAPCKA*HTSSICICKYATHLQTSTESS 579
SS++ L +S+D N T ++ C P S++ CK+ HLQ E S
Sbjct: 27 SSSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWS 77
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 30.3 bits (65), Expect = 1.1
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFG-----TITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 241
LY+KNL I ERL+ F G I AK ED R +GFV ++ +A+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSR---YGFVHYAERTSVMRAL 326
Query: 242 TEMNGRIVGTKPLYVALAQRKEDRKAH 322
+ L LA+ + D+K +
Sbjct: 327 KNTERYEIDGHMLDCTLAKPQADQKTN 353
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +2
Query: 383 FQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 562
F + +F S PP ++Y P + + P + + PPV S + + P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYK 76
Query: 563 PAP 571
P
Sbjct: 77 SPP 79
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 419 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = +2
Query: 383 FQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYR 562
F + +F S PP ++Y P + + P + + PPV S + + P Y+
Sbjct: 17 FVSQTTANYFYSSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYK 76
Query: 563 PAP 571
P
Sbjct: 77 SPP 79
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 419 SLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
S PP ++Y P + + P + + PPV S Y + P Y+ P
Sbjct: 45 SPPPPVKHYSPPPVYKSPPPPVKHYSPPPVYKSPPPPVKYYSPPPVYKSPP 95
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/70 (30%), Positives = 26/70 (37%)
Frame = +2
Query: 395 GASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 574
GAS +L R P + +P PR PP P S + P PAP
Sbjct: 658 GASDNVASNLGQPARSPPPISNSDKKPALPR--PPPPPPPPPMQHSTVTKVPPPPPPAPP 715
Query: 575 APAQSTIRTS 604
AP + TS
Sbjct: 716 APPTPIVHTS 725
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGR 184
LYV L+ I ++ + F +G + S +VM EDG+
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAEDGK 262
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 416 PSLPPA-PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 592
P+ PP+ P + P Q + PT QPP +P TQ + + PT P P P+QS
Sbjct: 24 PTRPPSQPPSHPPIQPSSQPPT------QPPSQPPTQPPTQPPSHPPTQPPTP-PPSQSP 76
Query: 593 IRTS 604
+ S
Sbjct: 77 SQPS 80
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ-PTYRPAPRAP 580
P PP P P + ++P TP+ P V+P + + + + PT +P P+ P
Sbjct: 43 PVKPPKPPAVKPPKPPAVKPPTPK---PPTVKPHPKPPTVKPHPKPPTVKPHPKPP 95
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 62 YQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 241
+Q NL+V +L + L + F +G I V S+GF F+ + EEA A
Sbjct: 15 FQSNNLWVGSLTPETTESDLTELFGRYGDIDRITVY----SSRGFAFIYYRHVEEAVAAK 70
Query: 242 TEMNG-RIVGTKPL 280
+ G + GT L
Sbjct: 71 EALQGANLNGTNEL 84
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.9 bits (64), Expect = 1.4
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQM-TQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQST 592
P +PP P Y PAQ+ + + PT PP RP Q + AN Q P +
Sbjct: 50 PLVPPGPPYAPPAQIPSSLLPT--NLPPPPPFRPGMQ-FTPVANFQNPSSGVPPPGSMPQ 106
Query: 593 IRTSLGARP 619
+ G RP
Sbjct: 107 YQPQPGMRP 115
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAP 571
P PP P Y P P P ++ PP P Y+ P+ P P
Sbjct: 440 PPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPP 491
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP 553
PP+P YY P + P+TP PP P+ Y + P
Sbjct: 735 PPSPVYYPPVTQSPPPPSTP-VEYHPPASPNQSPPPEYQSPPP 776
>At1g49620.1 68414.m05563 kip-related protein 7 (KRP7) /
cyclin-dependent kinase inhibitor 7 (ICK7) identical to
cyclin-dependent kinase inhibitor 7 (krp7) [Arabidopsis
thaliana] GI:14422297
Length = 195
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 35 QLKSERLTRYQGVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFS 214
+ K +R + Y+G N+ LDD DD+ LR + +S+ + S GF V S
Sbjct: 3 ETKPKRDSEYEGSNIKRMRLDD--DDDVLRSPTRTLSSSSSSSLAYSVSDSGGFCSVALS 60
Query: 215 SPEE 226
E+
Sbjct: 61 EEED 64
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 380 IFQPSGASGFFVPSLP---PAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQ 550
+F P S + P P P P Y P T P T N QPP+ T + + +
Sbjct: 606 VFSPPPPSPVYSPPPPSHSPPPPVYSPPPPTFSPPPTHNTN-QPPMGAPTPTQAPTPSSE 664
Query: 551 PTYRPAPRAPA-QSTIRTSLGA 613
T P P + + QS I + + A
Sbjct: 665 TTQVPTPSSESDQSQILSPVQA 686
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 68 GVNLYVKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKG--FGFVCFSS 217
G ++YV+NL +L + F FG I + + + +G FGFV F +
Sbjct: 292 GHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFET 343
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 235
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 258 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 317
Query: 236 A 238
A
Sbjct: 318 A 318
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +2
Query: 74 NLYVKNLDDTIDDERLRKEFAPFGTITSAKVML---EDGRSKGFGFVCF---SSPEEATK 235
++YV+NL I + +EF FGTI V L +D + FV F +S E A K
Sbjct: 317 SVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAIK 376
Query: 236 A 238
A
Sbjct: 377 A 377
>At4g22470.1 68417.m03245 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
hydroxyproline-rich glycoprotein DZ-HRGP from Volvox
carteri f. nagariensis GP|6523547; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 375
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/60 (31%), Positives = 24/60 (40%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTS 604
PP P P T +P P N QPP P + + A P P P P S +T+
Sbjct: 46 PPQPDPQPPTPPT-FQPAPPA-NDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTT 103
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 182 RSKGFGFVCFSSPEEATKAVTEMNGRIV---GTKPLYVALAQRKEDR 313
+S+G GFV +SS E A A+ +NG +PL V A+ K +
Sbjct: 7 QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 53
>At3g07100.1 68416.m00845 protein transport protein Sec24, putative
similar to protein transport protein Sec24A
(SEC24-related protein) [Homo sapiens] SWISS-PROT:O95486
Length = 1038
Score = 29.1 bits (62), Expect = 2.5
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = +2
Query: 383 FQPSGASGFFVPSLPPA--PRYYGP---AQMTQIRPTTPRWNAQPPVRPSTQAASAYANM 547
F AS F + PP P+ GP ++ RP TP +A P RP T + A
Sbjct: 11 FPARPASSPFASAPPPGIPPQSGGPPTGSEAVGFRPFTP--SASQPTRPFTASGPPPAPP 68
Query: 548 QPTYRPAPRAPAQSTIRTSLGARP 619
T RP +P S I G+RP
Sbjct: 69 VGTMRPGQPSPFVSQIP---GSRP 89
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = +2
Query: 410 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY-RPAPRA 577
+V S PP P YY P+ + + P + + PP S Y + P Y +P
Sbjct: 815 YVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPPPAYYSPSPKIEYKSPPPPYVYSSPPP 874
Query: 578 PAQS 589
P+ S
Sbjct: 875 PSYS 878
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 410 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPTY 559
+V S PP P YY P+ + + P +++ PP S Y + P Y
Sbjct: 738 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPYYSPSPKVEYKSPPPPY 789
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = +2
Query: 410 FVPSLPPAPRYYGPAQMTQIRPTTPRW---NAQPPVRPSTQAASAYANMQPTY-RPAPRA 577
+V S PP P YY P+ + + P + + PP S Y + P Y +P
Sbjct: 789 YVYSSPPPPPYYSPSPKVEYKSPPPPYVYSSPPPPTYYSPSPKVEYKSPPPPYVYNSPPP 848
Query: 578 PA 583
PA
Sbjct: 849 PA 850
>At4g34150.1 68417.m04846 C2 domain-containing protein similar to
calcium-dependent protein kinase [Dunaliella
tertiolecta] GI:6644464; contains Pfam profile PF00168:
C2 domain
Length = 247
Score = 28.7 bits (61), Expect = 3.3
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +2
Query: 386 QPSG---ASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPT 556
QPSG ASG+ PP P Y P T P P +A PP PS+ QP+
Sbjct: 180 QPSGYPPASGY-----PPQPSAYPPPS-TSGYPPIP--SAYPPPPPSSAYPPQPYPPQPS 231
Query: 557 YRPAPRAPAQ 586
Y P P Q
Sbjct: 232 YYPQGPYPGQ 241
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +2
Query: 416 PSLPPAPRYYG---PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQ 586
P PP+P PA Q P P PP PS+ S P P P+ P Q
Sbjct: 48 PPSPPSPDTQTSPPPATAAQPPPNQPPNTTPPPTPPSSPPPSI---TPPPSPPQPQPPPQ 104
Query: 587 ST 592
ST
Sbjct: 105 ST 106
>At5g66840.1 68418.m08427 SAP domain-containing protein contains
Pfam domain PF02037: SAP domain
Length = 551
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 449 PAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
PA RP PR +A P P A +YA + ++ P P P
Sbjct: 334 PANFYTSRPHAPRSHAPPTYAPRPHAPRSYAPIN-SHLPRPNIP 376
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP 580
PP P P PTTP + PPV+P T PT P + P
Sbjct: 126 PPTPTVKPPTTSPVKPPTTPPVQS-PPVQPPTYKPPTSPVKPPTTTPPVKPP 176
>At5g07820.1 68418.m00896 expressed protein
Length = 561
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 413 VPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPR 574
+PSLPP + IR TT R P + + +A+ N +P + P+
Sbjct: 354 LPSLPPPSEVVTGSDPRPIRQTTSRSKTSLPEKKQSGSANLVTNPKPESKIRPK 407
>At4g35870.1 68417.m05094 expressed protein
Length = 817
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +2
Query: 107 DDERLRKEFAPFGTITSAKVMLEDGRSKGFG--FVCFSSPEEATKAVTE 247
DDE+LRK + S ++GR++G G FV F A KAV +
Sbjct: 311 DDEKLRKLQELRADLESQLAAYKEGRAQGAGVAFVMFKDVYTANKAVQD 359
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/66 (30%), Positives = 25/66 (37%)
Frame = +2
Query: 416 PSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTI 595
P PP P Y P T ++P P PP P+ +A P Y P P+
Sbjct: 127 PYTPPPPTPYTPPPPT-VKPPPPPVVTPPPPTPTPEAPCPPPPPTP-YPPPPKPETCPID 184
Query: 596 RTSLGA 613
LGA
Sbjct: 185 ALKLGA 190
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +2
Query: 83 VKNLDDTIDDERLRKEFAPFGTITSAKVMLEDGRSKGFGFVCFSSPEEATKAV 241
VKNL + F FG I V + + RS +GFV F A +A+
Sbjct: 1080 VKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +2
Query: 422 LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAP-AQSTIR 598
LPPAP Y + P + PP PS A + +P P PR P +S
Sbjct: 226 LPPAPVY----------SSNPMVRSSPPGHPSPSAHLEEMSNRPPLHPQPRVPVTRSNSA 275
Query: 599 TSLGARP 619
G+RP
Sbjct: 276 KVSGSRP 282
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASA-YANMQPTYRPAPRAP 580
PP P P T P PR PPV A A +A +QP P P P
Sbjct: 249 PPPPPVVDPPPATHRAPPVPR---IPPVSGVPPAPFAPFAPLQPQQHPPPSPP 298
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 27.9 bits (59), Expect = 5.8
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Frame = +2
Query: 5 RQKELKRKFEQLKSERLTRYQGVNLYVKNLDDTIDDERL---RKEFAPFGTIT------S 157
+ K + + +QL S R+ + V Y+ L + DE L ++ F +G + +
Sbjct: 48 KSKSSEGRKQQLTSVRVIQRNLV--YIVGLPLNLADEDLLQHKEYFGQYGKVLKVSMSRT 105
Query: 158 AKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRK 304
A V L D ++ + EEA + + ++G I+ KPL K
Sbjct: 106 ASVKLSDNDFLHRRYITYGKEEEAVRCIQAVHGFILDGKPLKACFGTTK 154
>At5g06640.1 68418.m00750 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 689
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIR-PTTPR-WNAQPPVRPSTQAASAYANMQPTY 559
PP P YY P+ + P P +N+ PP S Y + P Y
Sbjct: 86 PPPPSYYSPSPKVNYKSPPPPNVYNSPPPPYYSPSPKVDYKSPPPPY 132
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +2
Query: 410 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP--STQAASAYANMQPTY 559
+V S PP P YY P+ + P P + PP P S Y + P Y
Sbjct: 206 YVYSFPPPPPYYSPSPKVGYKSPPAPYVYSSPPPPPYYSPSPKVNYKSPPPPY 258
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Frame = +2
Query: 410 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRP--STQAASAYANMQPTY 559
++ S PP P YY P+ + P P + PP P S Y + P Y
Sbjct: 154 YIYSSPPPPPYYSPSPKVDYKSPPPPYVYSSPPPPPYYSPSPKVEYKSPPPPY 206
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +2
Query: 410 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPT-YRPAPRAP 580
+V S PP P YY PA + P +++ PP S Y + P Y P+P+
Sbjct: 934 YVYSSPPPP-YYSPAPKVDYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYYSPSPKVD 992
Query: 581 AQS 589
+S
Sbjct: 993 YKS 995
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = +2
Query: 413 VPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPT--YRPAPRAPA 583
V S PP P Y PA + P P ++ P V + N P Y P+P+
Sbjct: 51 VYSSPPPPLEYSPAPKVDYKSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPYYSPSPKVDY 110
Query: 584 QS 589
+S
Sbjct: 111 KS 112
>At3g25240.1 68416.m03153 hypothetical protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 281
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 505 RGLCIPPWSCRSYLSH 458
RGL +PPW SYL H
Sbjct: 222 RGLSLPPWRRSSYLQH 237
>At2g31090.1 68415.m03797 expressed protein
Length = 75
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 565 WSVSGLHICICRCCLC 518
W V L CIC CCLC
Sbjct: 32 WIVGLLLSCICPCCLC 47
>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 398
Score = 27.9 bits (59), Expect = 5.8
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = -3
Query: 595 YCRLGRSSRCWS---VSGLHICICRCCL-CARPYRGLCIPPW----SCRSY 467
YC R S S +SGL+I + RCC+ C P+ C W SC Y
Sbjct: 245 YCPNPRCSTLMSETELSGLNIGVRRCCVKCGEPFCVKCKVSWHNNLSCDEY 295
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/58 (25%), Positives = 23/58 (39%)
Frame = +2
Query: 434 PRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPAQSTIRTSL 607
P+ P +++ RP P+ QPP T ++P P P PA T +
Sbjct: 56 PQMLPPELLSRARPQFPQSPQQPPQPIQTLPPPIQQQLKPLNLPRPPVPAHGIDPTKM 113
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 422 LPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQP--TYRPAPRAPAQSTI 595
+PP PR+ P+ RP+TP +++ P P P + RP P P+ S
Sbjct: 191 IPPPPRHL-PSPPASERPSTPPSDSEHPSPPPPGHPKRREQPPPPGSKRPTPSPPSPSDS 249
Query: 596 RTSLGARP 619
+ + P
Sbjct: 250 KRPVHPSP 257
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 526
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 526
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 526
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 526
PP P Y P + TQ P P ++ QP PS A
Sbjct: 47 PPPPSYAQPPEYTQ--PPPPLYSTQPYSAPSYSA 78
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 251 NGRIVGTKPLYVALAQR 301
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 251 NGRIVGTKPLYVALAQR 301
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +2
Query: 77 LYVKNLDDTIDDERLRKEFAPFGTITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEM 250
++V L + ++R+ FG + ++ E G SKG+ F + A +
Sbjct: 361 IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAAL 420
Query: 251 NGRIVGTKPLYVALAQR 301
NG +G K L V A +
Sbjct: 421 NGIKMGDKTLTVRRANQ 437
>At4g08400.1 68417.m01388 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 513
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +2
Query: 410 FVPSLPPAPRYYGPAQMTQIRPTTPR--WNAQPPVRPSTQAASAYANMQPTYRPAPRAPA 583
+V S PP P YY P+ + P +++ PP S Y + P Y +P P
Sbjct: 212 YVYSSPPPP-YYSPSPKVDYKSPPPPYVYSSPPPPYYSPSPKVNYKSPPPPYYRSPPPPY 270
Query: 584 QS 589
S
Sbjct: 271 YS 272
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 410 FVPSLPPAPRYYGPAQMTQIR-PTTPRWNAQPPVRPSTQAASAYANMQPTY 559
+V S PP P YY P+ + P P + + PP S Y + P Y
Sbjct: 237 YVYSSPPPP-YYSPSPKVNYKSPPPPYYRSPPPPYYSPSPKVDYKSPPPPY 286
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = +2
Query: 425 PPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQAASAYANMQPTYRPAPRAPA 583
PP P P+ + PT P + PPV P + P P P P+
Sbjct: 155 PPTPTPSVPSPTPPV-PTDPMPSPPPPVSPPPPTPTPSVPSPPDVTPTPPTPS 206
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,290,368
Number of Sequences: 28952
Number of extensions: 279600
Number of successful extensions: 1699
Number of sequences better than 10.0: 251
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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