Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0457
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   3.2  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   4.2  
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    25   9.6  

>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 207 NPTLQIFPFVKFRASNLWQGDLWHKVFL 124
           NP L+ F F K  AS L Q D +H++ L
Sbjct: 526 NPRLEKFSFEKLLASVLNQFDRYHRLLL 553


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 45  YSIALIYNFFFCNVWITQN--YTKFKIS*EKLYAIGLLAINSMLGIL 179
           Y ++L + F F   +I  N  YT F    EK   +GLL  +  LG L
Sbjct: 350 YGMSLFHLFLFA-AFIRNNSLYTSFNFITEKPVIVGLLLFSDALGPL 395


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 205 ILIKLVSNLTKLESQLTVKKKLFYNHRSQWPGPKAISC 318
           ILI   SN TK +S++ +K  +    ++ WP PK I C
Sbjct: 205 ILIDRDSNRTKHDSRI-LKDSI----KNNWPEPKIIRC 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,819,218
Number of Sequences: 5004
Number of extensions: 34502
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)