Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0456
(539 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 139 3e-34
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 31 0.14
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.25
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.44
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 29 0.58
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23... 28 0.77
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 28 1.0
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.3
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 2.3
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 26 4.1
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 4.1
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 26 4.1
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 25 5.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 7.2
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 7.2
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 7.2
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 9.5
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 139 bits (336), Expect = 3e-34
Identities = 74/180 (41%), Positives = 109/180 (60%), Gaps = 1/180 (0%)
Frame = +1
Query: 1 VKAELRQHFCSLCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLIPIFVFLAKDDQDSVR 180
VK LRQ F LC D+ PMVRR AA +F +V + + IP+F L+ DDQDSVR
Sbjct: 163 VKVSLRQSFSHLCHDEAPMVRRPAATNCAKFVFLVTKQEAIDEFIPLFNSLSNDDQDSVR 222
Query: 181 LLAAEACAVVASLLAPE-DMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELAR 357
LL+ + +A +L + ++ +++ +R+ D+SWR RYMVA FV+L + VGP L +
Sbjct: 223 LLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAKVVGPSLIK 282
Query: 358 TDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQH 537
+L + F L+KD+E EVR A A ++ FC LDK I++ I+P I++L+ D QH
Sbjct: 283 DELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDK----RIVLEEIIPVIQELINDPAQH 338
Score = 61.3 bits (142), Expect = 9e-11
Identities = 38/130 (29%), Positives = 57/130 (43%)
Frame = +1
Query: 34 LCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLIPIFVFLAKDDQDSVRLLAAEACAVVA 213
L D VR A +G A + E L+P+F+ L KD+ VRL VV
Sbjct: 331 LINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVN 390
Query: 214 SLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLK 393
++ E + Q ++P + A D WRVR + D L Q +G E + + + L+
Sbjct: 391 KVVGIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFFNEKMGNLCMSWLE 450
Query: 394 DSEAEVRAAA 423
D +R AA
Sbjct: 451 DHVYSIREAA 460
Score = 53.6 bits (123), Expect = 2e-08
Identities = 40/146 (27%), Positives = 59/146 (40%)
Frame = +1
Query: 1 VKAELRQHFCSLCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLIPIFVFLAKDDQDSVR 180
++ L Q S D + R A + AKVV +K +LI FV L KD + VR
Sbjct: 242 IRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEVR 301
Query: 181 LLAAEACAVVASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELART 360
A LL + + ++P ++ D + VR + L +G E
Sbjct: 302 RAIATQIPGFCELLDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTE 361
Query: 361 DLAQIFQALLKDSEAEVRAAAAGKVK 438
L +F LLKD EVR K++
Sbjct: 362 YLLPMFLELLKDENPEVRLNIISKLE 387
Score = 53.6 bits (123), Expect = 2e-08
Identities = 37/140 (26%), Positives = 60/140 (42%)
Frame = +1
Query: 1 VKAELRQHFCSLCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLIPIFVFLAKDDQDSVR 180
+K EL + F L +D VRRA A ++ F ++++ V ++IP+ L D VR
Sbjct: 281 IKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVIQELINDPAQHVR 340
Query: 181 LLAAEACAVVASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELART 360
+A L E ++++P D + VR + K + + VG EL
Sbjct: 341 AALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQ 400
Query: 361 DLAQIFQALLKDSEAEVRAA 420
L L +D + VR A
Sbjct: 401 SLLPAIVTLAEDKQWRVRLA 420
Score = 47.6 bits (108), Expect = 1e-06
Identities = 43/167 (25%), Positives = 66/167 (39%)
Frame = +1
Query: 25 FCSLCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLIPIFVFLAKDDQDSVRLLAAEACA 204
F L +D+ P VR KL KVV IE + L+P V LA+D Q VRL +
Sbjct: 367 FLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIP 426
Query: 205 VVASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQA 384
++A L E + + + D + +R +L + G E A + F A
Sbjct: 427 LLAQQLGVEFFNEKMGNLCMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATETIIPKFLA 486
Query: 385 LLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCD 525
+ R + + L+ +I ILP ++ LV D
Sbjct: 487 MRSHPNYLYRMTTIFAISEIAPALN----AEVIEKQILPTLEQLVND 529
Score = 43.6 bits (98), Expect = 2e-05
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Frame = +1
Query: 31 SLCQDDTPMVRRAAAYKLGEFAKVVEIEYVKSDLIPIFVFLAKDDQDSVRLLAAEACAVV 210
S +D +R AA L + ++ +E+ +IP F+ + R+ A + +
Sbjct: 447 SWLEDHVYSIREAAIKNLRKLTEIFGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEI 506
Query: 211 ASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQ--AVGPE--LARTDLAQIF 378
A L E +E+ ++PT+ D +R+ VA F L+ A G + + + +
Sbjct: 507 APALNAEVIEKQILPTLEQLVNDPIPNIRFNVAKAFEVLKPVLAAGGDSTVYEQQIIPLL 566
Query: 379 QALLKDSEAEVR 414
+ L KD++ +V+
Sbjct: 567 EQLTKDNDPDVQ 578
Score = 38.7 bits (86), Expect = 5e-04
Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 1/164 (0%)
Frame = +1
Query: 25 FCSLCQDDTPMVRRAAAYKLGEFAKVVEIEY-VKSDLIPIFVFLAKDDQDSVRLLAAEAC 201
F SL DD VR + + A+V++ + ++ L+ D R + A
Sbjct: 210 FNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRSFVSDSSWRTRYMVAANF 269
Query: 202 AVVASLLAPEDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQ 381
+A ++ P ++ ++ DT VR +A + + + + ++ + Q
Sbjct: 270 VKLAKVVGPSLIKDELIKPFVLLMKDTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVIQ 329
Query: 382 ALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKD 513
L+ D VRAA + L K ++ M L +KD
Sbjct: 330 ELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKD 373
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 30.7 bits (66), Expect = 0.14
Identities = 27/94 (28%), Positives = 43/94 (45%)
Frame = -1
Query: 347 SGPTACCSSTNLSATMYRTLHEVSPARARTVGITCCSISSGASREATTAHASAASKRTES 168
S A SS+ SAT+ H V A+ G + + S +TT+ ASA
Sbjct: 84 SNSAAPASSSPTSATLSTAAHPVHTNAAQVAGSSSSYVYSVPPTNSTTSQASAKHSAVPH 143
Query: 167 WSSFAKNTKMGMRSLLTYSISTTLANSPSL*AAA 66
SS ++T + + T S ST +++S S+ +A
Sbjct: 144 RSSQFQSTTLTPST--TDSSSTDVSSSDSVSTSA 175
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.25
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -2
Query: 304 PCTAPSTKYLRHEPARSASHVAPYPRVPAEKPQQHMPLRLANVPSLGHPLPKT 146
P +AP +K + PA + V P P++ ++ P +PL A+ P + P+P T
Sbjct: 991 PPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPP--VPLPSADAPPI--PVPST 1039
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.44
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = -1
Query: 362 SVRASSGPTACCSSTNLSATMYRTLHEVSPARARTVGITCCSISSGASREAT-TAHASAA 186
S +SS ++ SST S++ ++ S + + + T +ISS +S ++ T+ +S
Sbjct: 248 SSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI 307
Query: 185 SKRTESWSSFAKN-TKMGMRSLLTYSISTTLANS 87
S + S SSF+ + M S ++S S T ++S
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSS 341
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 28.7 bits (61), Expect = 0.58
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 253 PTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTD--LAQIFQALLKDSEAEVRAAAA 426
PTV D +V+ L V P LA+ D L QI KD EVR +A
Sbjct: 651 PTVDVPDRDFLVTTLDLVSGIIQALGSQVSPLLAQADPPLGQIIGICAKDEVPEVRQSAY 710
Query: 427 GKVKDFCM 450
+ D CM
Sbjct: 711 ALLGDMCM 718
>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 28.3 bits (60), Expect = 0.77
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 150 KHKDGNEIALDVFDFYDFSELPKFVGGSASHHRSVILA 37
K+KD L DFY + L K++ GS + +R +LA
Sbjct: 345 KYKDKKNNFLPPKDFYFINLLFKYISGSLTFNRGTVLA 382
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 27.9 bits (59), Expect = 1.0
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -1
Query: 173 ESWSSFAKNTKMGMRSLLTYSISTTLANSPSL*AAARRTIGVSSWQSEQ 27
+SW + A ++ +G SLL IST + L RRTI +SW + Q
Sbjct: 449 DSWCTGASDSSVGT-SLLIDVISTFANMAQDLSWKPRRTIVFASWDARQ 496
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 361 DLAQIFQALLKDSEAEVRAAAAGKVKDFC 447
D+ +F A L+DSE EVR+ AA + C
Sbjct: 894 DVFSLFMAALEDSEGEVRSNAAYSMGLLC 922
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.3
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Frame = -1
Query: 341 PTACCSSTNLSATMYRTLHEVSPARARTVGITCCSISSG---ASREATTAHASAASKRTE 171
PT+ SST LS+ T S +V T + +S +S +TTA +++++ T
Sbjct: 416 PTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTS 475
Query: 170 SWSSFAKNTKMGMRSLLTYSISTTLANSPSL*AAARRTIGVSS 42
S+ A + + + + +T+ +++P A + + VSS
Sbjct: 476 VNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSS 518
Score = 25.4 bits (53), Expect = 5.4
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = -1
Query: 341 PTACCSSTNLSATMYRTLHEVSPARARTVGITCCSISSGASREATTAHASAASKRTESWS 162
PT+ SST LS+ T S +V T + +S +T +SA+ E +
Sbjct: 530 PTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATSASSTPFGNSTITSSASGSTGEFTN 589
Query: 161 SFAKNTKMGMRSLLTYSISTTLANS 87
+ + N + +T ST L+NS
Sbjct: 590 TNSGNGDVS--GSVTTPTSTPLSNS 612
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/70 (28%), Positives = 27/70 (38%)
Frame = -2
Query: 364 DLYELALDQQLVAALRTYQRPCTAPSTKYLRHEPARSASHVAPYPRVPAEKPQQHMPLRL 185
DL D L R+ CT S K + +P S + R +EK QQH + +
Sbjct: 188 DLLPTTEDSDLFMTFRSIYPSCT--SAKIIV-DPVTGLSRKYGFVRFSSEKEQQHALMHM 244
Query: 184 ANVPSLGHPL 155
G PL
Sbjct: 245 QGYLCQGRPL 254
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 177 YRVLVILCQKHKDGNEIALDVFDFY 103
Y L + CQKH D ++FD+Y
Sbjct: 64 YCELFMKCQKHPDAAAYKKELFDYY 88
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 516 QVLDLWQDHGHDDVFLMSFIQVHTEVLDLP 427
++LDL++D ++ ++VH VLD P
Sbjct: 525 ELLDLFKDEEFGKADVIQLVEVHMPVLDAP 554
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 203 AHASAASKRTESWSSFAKNTKMGMRSLLTYSISTTLANSPS 81
AHA+AA S + N S LT S T LAN+ S
Sbjct: 24 AHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTS 64
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -3
Query: 537 VLVGITHQVLDLWQDHGHDDVFLMSFIQVHTEVLDLPSSCGSNLSLRVLEQ 385
VL G THQ+LD + HD + ++S + V L C L + +E+
Sbjct: 370 VLRGATHQLLDESERAIHDALAVLSQTVAESRV-TLGGGCAEMLMAKAVEE 419
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.4
Identities = 23/104 (22%), Positives = 42/104 (40%)
Frame = -1
Query: 353 ASSGPTACCSSTNLSATMYRTLHEVSPARARTVGITCCSISSGASREATTAHASAASKRT 174
+SS ++ SST +T V+PA T T + SG +++ + S
Sbjct: 877 SSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSA 936
Query: 173 ESWSSFAKNTKMGMRSLLTYSISTTLANSPSL*AAARRTIGVSS 42
+ S A T S ++S S+ + S + A T +++
Sbjct: 937 ITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIAT 980
Score = 24.6 bits (51), Expect = 9.5
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = -1
Query: 275 PARARTVGITCCSISSGASREATTAHASAASKRTESWSSFAKNTKMGMRSLLTYSISTTL 96
P + + S S+ T++ A +S + SS + +S LT S +TL
Sbjct: 733 PTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNS--STL 790
Query: 95 ANSPSL*AAARRTIGVSS 42
A S L +++ RTI SS
Sbjct: 791 ATSLYLSSSSSRTISTSS 808
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 364 DLYELALDQQLVAALRTYQRPCTAPSTKYLRHEPARSASHVAPY-PRVPAEKPQQHMPL 191
DL E+ ++ + R+ + +AP R + + S+ A Y P P++K QH+PL
Sbjct: 206 DLDEVISEKDTSLSRRSSRGRSSAPK----RRKDSGSSKTTATYIPHNPSKKSSQHLPL 260
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 217 EKPQQHMPLRLANVPSLGHPLPKT 146
+K Q H+P R VPS+ L K+
Sbjct: 294 KKTQSHLPNRTTEVPSISKQLSKS 317
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 322 ELQQAVGPELARTDLAQIFQA 384
EL Q + P+L RT+L +I +A
Sbjct: 191 ELVQQISPDLPRTELLKILEA 211
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -2
Query: 328 AALRTYQRPCTAP-STKYLRHEPARSASHVAPYPRVPAEKPQQHMPLRLANVPSL 167
A R Y R P T E ++SAS +A +VP +P + + L SL
Sbjct: 608 AGARVYNRSVATPVMTPSNPFEISKSASQLASIAQVPVSEPAKTSEVNLKKSLSL 662
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +1
Query: 364 LAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEH 477
L++I + L D E +A +++DF L EH
Sbjct: 294 LSKIARKLSSDFEGRRQAKTVNQIRDFVSKLGSLQSEH 331
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,646
Number of Sequences: 5004
Number of extensions: 40693
Number of successful extensions: 163
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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