Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0454
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    48   2e-06
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    27   2.5  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    27   3.3  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    27   3.3  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    26   7.5  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   7.5  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    25   10.0 
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   10.0 
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   10.0 
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    25   10.0 
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    25   10.0 
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    25   10.0 

>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 32/144 (22%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
 Frame = +3

Query: 402 LTQFLCCSIFVFIFYLAYGYFLELIFAKP---EVKPVSLYITLVQFMITMLLSYGESWIR 572
           + Q   C I ++  +L++    E I  +P   E       ++L Q  +T+L     +W  
Sbjct: 5   MRQLFVCMIGIYGSFLSWAVMQEKIITRPYDGERFSSPALLSLAQSFMTVLCGLLWNWFH 64

Query: 573 NPIKRKV--P--LKTYAVLAALTLGTMSFSNLALSYLNYPTQLIFKSCKLIPVMIGSIII 740
               R +  P  L  ++ +A     +  F   ++ +L+YPT ++ KSCKL+PV+   + +
Sbjct: 65  GVSARGLLEPKFLGYFSSIAISASLSSYFGYASMFHLSYPTVILGKSCKLLPVIALHVFV 124

Query: 741 MRKRYSFLDYVAAIVMCVGLTMFT 812
            ++++    Y+   ++  G+++F+
Sbjct: 125 YKRKFPPHKYLIVTMITAGVSIFS 148


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 462 FLELIFAKPEVKPVSLYITLVQFMITMLLSYGESWIRN 575
           F  +I     + P+ +Y  ++QF   M  SYG S  RN
Sbjct: 450 FRSVIITSGTLSPLDMYPKMLQFNTVMQESYGMSLARN 487


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 744 RKRYSFLDYVAAIVMCV 794
           RKR+SFLDYV  I + V
Sbjct: 26  RKRFSFLDYVVVIFLTV 42


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +3

Query: 273 VMETSSDKMNSVKETFIRIDDENSRTSKTEINILCFDITNYSQLTQFLCCSIFVFIFYL 449
           + +++ D +   KE  I++  E+ R +KTE N  CFD ++ S+L   L   +  F + L
Sbjct: 211 IPQSTKDLLRIWKEAKIQMH-EDFRCNKTEFNEACFDASS-SRLGCILMDGLSTFYWQL 267


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 551 LWRIMDKKSYQKESSTKNVCSF 616
           +WR  D+ S  + SS KNVC +
Sbjct: 508 VWRCKDQYSSNQFSSLKNVCQY 529


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 821 VSQSKHSQSYTHNNCRYIIQKRITFSHYDNTTNH 720
           VS ++ S S +  NCR ++      S   NTTN+
Sbjct: 204 VSTNRLSSSTSSMNCRNLVPDNFNISIRPNTTNY 237


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +2

Query: 593 STKNVCSFSCIDIRNNVIFEFSFKLFELSNSIDIQEL*TYT------SYDW*YYHNEKTL 754
           +TK+ C F+ +     ++   S KL   SNS  +  L   +      ++DW   + ++T 
Sbjct: 146 ATKHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLELVSQIASIWAFDWPMMNLQETF 205

Query: 755 FVFGLCSGNC 784
             +  C+  C
Sbjct: 206 IYWDRCTNAC 215


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 98  INSELSELHKKRYNNRY 148
           I SE  E+ K+RY+N+Y
Sbjct: 187 IKSETDEIEKQRYSNKY 203


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 381 DITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEVKPVSLYITLVQFMITMLL 548
           DI NY  +     C + +F+F +  G F +++ A   +  +  Y  L    +T LL
Sbjct: 354 DIVNYMSVDTQKVCDLTMFLFVIVSGPF-QIVLALTNLYHLVGYGALSGAFVTFLL 408


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 623 IDIRNNVIFEFSFKLFELSNSIDIQEL 703
           ID+++  IF F +KL EL N  DI  L
Sbjct: 169 IDLQSQWIFCFCYKLPELLNGEDISTL 195


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +3

Query: 357 TEINILCFDITNYSQLTQFLCCSIFVFIFYLAYGYFLELIFAKPEV---KPVSLYI 515
           T ++IL F + + S   Q L  S F+F   L+  YFL     +P++   +P++++I
Sbjct: 182 TTLSILPFPVNHGSSFGQELKSSAFLFRNNLSDRYFLAFGDVEPDMVASEPLNIHI 237


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 623 IDIRNNVIFEFSFKLFELSNSIDIQEL 703
           ID+++  IF F +KL EL N  DI  L
Sbjct: 169 IDLQSQWIFCFCYKLPELLNGEDISTL 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,245
Number of Sequences: 5004
Number of extensions: 64561
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)