Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0453
         (673 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D558F3 Cluster: PREDICTED: similar to CG31299-PA...    37   0.51 
UniRef50_Q5KB21 Cluster: DNA-(Apurinic or apyrimidinic site) lya...    33   8.3  

>UniRef50_UPI0000D558F3 Cluster: PREDICTED: similar to CG31299-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG31299-PA, isoform A - Tribolium castaneum
          Length = 476

 Score = 36.7 bits (81), Expect = 0.51
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 192 AYRDCETASLSGFKLKPPYTLWRIHLS*RVCRT 290
           AY DC+++S +    +PPYT W+I     VC T
Sbjct: 390 AYADCDSSSANSAAREPPYTTWKIRDEGEVCHT 422


>UniRef50_Q5KB21 Cluster: DNA-(Apurinic or apyrimidinic site) lyase,
           putative; n=1; Filobasidiella neoformans|Rep:
           DNA-(Apurinic or apyrimidinic site) lyase, putative -
           Cryptococcus neoformans (Filobasidiella neoformans)
          Length = 654

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +3

Query: 312 LVG-ASVEKQPRDVGEGPVLPSSEQNTLH*PLRR 410
           LVG  ++ +QP D GEGPV  S+EQ+  H P RR
Sbjct: 205 LVGDINIVRQPMDSGEGPVRSSAEQHYSH-PARR 237


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 591,199,469
Number of Sequences: 1657284
Number of extensions: 10668755
Number of successful extensions: 20145
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20140
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)