Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0453
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56610.1 68414.m06511 syntaxin-related family protein similar...    28   4.9  
At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put...    27   8.6  

>At1g56610.1 68414.m06511 syntaxin-related family protein similar to
           proteins At3g54160, At1g47920 (syntaxin SYP81),
           At5g41830, At3g44180, At3g58890, At1g48390,  At3g59270
           [Arabidopsis thaliana]; contains a novel domain similar
           to F-box that is shared among other proteins in
           Arabidopsis
          Length = 535

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 285 DILSNLNVSSRVYKEAST*TLKATQSRNL 199
           DI  N  +SSRV+ +A+  TLK   +R+L
Sbjct: 183 DIKGNFQLSSRVFSQATLVTLKLATNRSL 211


>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
           putative contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain
          Length = 772

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 420 FSDIALMVNVTCSAQNLATPVLHPHLGVASLRKPRLIKFKFQKKSDILSNL 268
           F D+ LM+N+  S+ NL+ P+      +++L    L       + D+L +L
Sbjct: 163 FQDLGLMINIDLSSNNLSGPLPPSMQNLSTLTSLLLQNNHLSGELDVLQDL 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,948,401
Number of Sequences: 28952
Number of extensions: 245233
Number of successful extensions: 450
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)