Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0451
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...   158   9e-40
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...   102   5e-23
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    26   4.7  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   8.3  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   8.3  

>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score =  158 bits (383), Expect = 9e-40
 Identities = 75/157 (47%), Positives = 106/157 (67%), Gaps = 4/157 (2%)
 Frame = +2

Query: 266 PFTLPTNRQVSSIPRAMPD---GSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKDMDDI 436
           P  LPT R++S+IP+ + +   G  E W+YPSQQMF++AM RK W     +  P+DM  I
Sbjct: 42  PTMLPTEREISTIPKVVTESDSGKEEKWIYPSQQMFFDAMKRKNW-----NPHPEDMKTI 96

Query: 437 IRIHNANNEQAWQEVLKWE-ALHAKECGHPRLKSFGGKATQYSPRAVIRSWLGYELPFDR 613
           + IHNA NE+AWQ++L+WE    +++CG P+L+ F G   + +P+A I + LGY  PFDR
Sbjct: 97  VPIHNAVNERAWQDILQWEQGWGSEKCGGPKLERFDGNVKKLTPKARILNLLGYNKPFDR 156

Query: 614 HDWIVDRCGKDVRYIIDYYHGGEVDNKYQFAMLDVRP 724
           HDW+V+RCG+ V Y+ID+Y+G  V N      LDVRP
Sbjct: 157 HDWLVNRCGRKVAYVIDFYNGPTV-NGTPSIYLDVRP 192


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score =  102 bits (245), Expect = 5e-23
 Identities = 70/166 (42%), Positives = 87/166 (52%), Gaps = 11/166 (6%)
 Frame = +2

Query: 260 DQPFTLPTNRQVSSIPRAMPDGSTEFWVYPSQQMFWNAMLRKGWRWKDEDIKPKDMDDII 439
           DQ   L T R  SSIP+   DG    W YPS Q  +NAM RKG+R   E++       ++
Sbjct: 199 DQVVGLETTRTTSSIPKV--DGKN--WEYPSPQQMYNAMWRKGYRDSGENV-----PIMV 249

Query: 440 RIHNANNEQAWQEVLKWEALHAKECGHPRLKSFGGKATQYSPRAVIRSWLGY-------- 595
           ++HN  NE AW E+  WE   A E   P+L  F G A + +PRA+    LG         
Sbjct: 250 QVHNFLNEGAWSEIKAWER-EAGENTEPKLLRFEGNANKRTPRALWYMMLGRINPNRWGS 308

Query: 596 -ELPFDRHDWIVDRCGKD-VRYIIDYYHGGE-VDNKYQFAMLDVRP 724
            E PFDRHDW V R     VRY+IDYY   +  D K  F+ LDVRP
Sbjct: 309 GEGPFDRHDWYVQRKDNSIVRYVIDYYEAPDSADGKPVFS-LDVRP 353



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 128 NPPPECPMHNKTEQ 169
           NPPP CPMH  + +
Sbjct: 83  NPPPGCPMHKASNE 96



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 125 VNPPPECPMHNKTEQKPKVSE 187
           V PP  CPM N  ++   VSE
Sbjct: 119 VQPPATCPMSNSNQKPAGVSE 139


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 276 CLQTDKFPLFLEQCLMAQLNSGFIQVNKCFGMLCCVKAGV 395
           CL +  F LFLE+  + QL S F  +N C  ++    A +
Sbjct: 602 CLNSQGFDLFLEKNPIPQLFSIFTSLNHCKSLISSDNAAI 641


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 552 LNIVLEPLYVLGLG--MSYHSTVMTGLWTDVGRTCAISLI 665
           +NI    L+ L LG  +++H   + GLW  +G+  A+S++
Sbjct: 383 VNITAYYLFALPLGIYLAFHGKGLVGLW--IGQVIALSIV 420


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 608 DRHDWIVDRCGKDVRYIIDYYHGGEVDNKY 697
           +R  WI  RCGKD   I D      V+ ++
Sbjct: 742 ERIRWIEQRCGKDASEIQDVKEAFAVNRRF 771


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 89  EAHVNIKIGEK-DVNPPPECPMHNKTEQKPKVSECPVQHGNDINP 220
           E +V  +I +K  ++  P+  M  K  +KPKVSE    H  +I+P
Sbjct: 104 EDNVEQEIKQKRSLSESPQESMLEKVSKKPKVSEA---HNEEISP 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,805
Number of Sequences: 5004
Number of extensions: 73050
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)