Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0451
         (724 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.55 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.9  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   8.9  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   8.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 629 DRCGKDVRYIIDYYHGGEVD 688
           D C  D+++II++ + GE+D
Sbjct: 80  DVCFNDLKFIIEFVYRGEID 99


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +2

Query: 431 DIIRIHNANNEQAWQEVLKWEALHAKEC 514
           D+    ++ N Q+WQ +     LH   C
Sbjct: 75  DVHHFESSFNAQSWQRLTSLHELHVHGC 102


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 525 D*RVLEARRLNIVLEPLYVL 584
           D + LEAR  ++V EP Y++
Sbjct: 36  DRQSLEARSADLVPEPRYII 55


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 525 D*RVLEARRLNIVLEPLYVL 584
           D + LEAR  ++V EP Y++
Sbjct: 36  DMQPLEARSADLVPEPRYII 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,042
Number of Sequences: 438
Number of extensions: 5575
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)