Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0451
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02420.1 68417.m00327 lectin protein kinase, putative similar...    29   4.1  
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    29   4.1  
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1...    28   5.5  
At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to SP|P1...    28   5.5  

>At4g02420.1 68417.m00327 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 669

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = -1

Query: 235 RHHVEWIDIISMLYWTFRNLWLLLRFVMHRALRWRIHIFLSDFYINVSLSRHLIPHLYVL 56
           R +  W+ +IS+L   F  +  L+RF+M R  ++   +   D+      +R     LY  
Sbjct: 289 RFYKNWVPLISLLLIPFLLIIFLVRFIMKRRRKFAEEV--EDWETEFGKNRLRFKDLYYA 346

Query: 55  RKSSEEEKI 29
            K  +++ I
Sbjct: 347 TKGFKDKNI 355


>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 107 KIGEKDVNPPPEC--PMHNKTEQKPKVSECPVQHGNDINP 220
           K+ ++ V PPP    P+H+    KP+V   P   GN I P
Sbjct: 75  KMDKEKVPPPPSPHPPLHSLPSSKPEVKPHPRPTGNPICP 114


>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
           SP|P14713 Phytochrome B {Arabidopsis thaliana}
          Length = 1172

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 359 MFW-NAMLRKGWRWKDEDIKPKDMDDIIRIHNANNEQAWQEVLK 487
           +FW  +   K  +W      P+D DD  R+H  ++ QA+ EV+K
Sbjct: 550 LFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFQAFLEVVK 593


>At1g09570.1 68414.m01073 phytochrome A (PHYA) identical to
           SP|P14712 Phytochrome A {Arabidopsis thaliana}
          Length = 1122

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 392 RWKDEDIKPKDMDDIIRIHNANNEQAWQEVLKWEALHAKE 511
           RW      P D DD  R+H  ++ +A+ EV+K  +L  K+
Sbjct: 531 RWGGAKHDPDDRDDARRMHPRSSFKAFLEVVKTRSLPWKD 570


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,134,573
Number of Sequences: 28952
Number of extensions: 394762
Number of successful extensions: 919
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)